View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11128_low_9 (Length: 233)

Name: NF11128_low_9
Description: NF11128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11128_low_9
NF11128_low_9
[»] chr5 (3 HSPs)
chr5 (17-214)||(39732204-39732401)
chr5 (97-151)||(32676875-32676929)
chr5 (95-134)||(40837665-40837704)
[»] chr2 (3 HSPs)
chr2 (97-142)||(32201079-32201124)
chr2 (97-142)||(9929492-9929537)
chr2 (97-138)||(26575930-26575971)
[»] chr7 (5 HSPs)
chr7 (96-142)||(44572669-44572715)
chr7 (97-142)||(27616186-27616231)
chr7 (97-138)||(8799619-8799660)
chr7 (95-142)||(45216171-45216216)
chr7 (97-134)||(10678212-10678249)
[»] chr8 (2 HSPs)
chr8 (96-140)||(15850714-15850758)
chr8 (169-208)||(4770479-4770518)
[»] chr3 (1 HSPs)
chr3 (94-142)||(43922199-43922247)
[»] chr1 (3 HSPs)
chr1 (98-142)||(23431728-23431772)
chr1 (97-140)||(10171701-10171744)
chr1 (97-142)||(32740711-32740756)
[»] chr6 (1 HSPs)
chr6 (99-142)||(12843766-12843809)
[»] chr4 (2 HSPs)
chr4 (97-142)||(54305517-54305562)
chr4 (97-142)||(658677-658722)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 39732401 - 39732204
Alignment:
Q  17 aataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatggactccga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732401 aataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatggactccga 39732302  T
Q  117 cacgaacacctgacacgacactgacatgttgacactactaaataaatgcaaaaaacattggacaccgacaccgctacaaatttatttatttataaata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39732301 cacgaacacctgacacgacactgacatgttgacactactaaataaatgcaaaaaacattggacaccgacaccgctacaaatatatttatttataaata 39732204  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 32676929 - 32676875
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacactgacatgttgacac 151  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| || |||||    
T  32676929 ctatgaagcatggactccgacacggacacctgacacgacactgacacgtcgacac 32676875  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 40837665 - 40837704
Alignment:
Q  95 acctatgaagcatggactccgacacgaacacctgacacga 134  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  40837665 acctatgaagtatggactccgacacggacacctgacacga 40837704  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 32201124 - 32201079
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  32201124 ctatgaagcatggactccaacacgaacacctgacacgacactgaca 32201079  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 9929492 - 9929537
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||    
T  9929492 ctatgaagcatggactacgacacaaacacttgacacgacactgaca 9929537  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 26575930 - 26575971
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacact 138  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  26575930 ctatgaagcatggactccgacacggacacctgacacaacact 26575971  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 44572715 - 44572669
Alignment:
Q  96 cctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||    
T  44572715 cctatgaagcatggactccgacacggactcctgacacgacactgaca 44572669  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 27616186 - 27616231
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  27616186 ctatgaagcatggactccgacacgtacacctgacacgatactgaca 27616231  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 8799619 - 8799660
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacact 138  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  8799619 ctatgacgcatggactccgacacggacacctgacacgacact 8799660  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 45216216 - 45216171
Alignment:
Q  95 acctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||    
T  45216216 acctatgaagcatggactc--acacggacacctgacacgacactgaca 45216171  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 10678212 - 10678249
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacga 134  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  10678212 ctatgaagcatggactccgacacggacacctgatacga 10678249  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 15850758 - 15850714
Alignment:
Q  96 cctatgaagcatggactccgacacgaacacctgacacgacactga 140  Q
    |||||||| |||||||||||||||| |||||||||||||||||||    
T  15850758 cctatgaaacatggactccgacacggacacctgacacgacactga 15850714  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 4770518 - 4770479
Alignment:
Q  169 aaacattggacaccgacaccgctacaaatttatttattta 208  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  4770518 aaacattggacaccgacaccgttacaaatttattaattta 4770479  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 43922247 - 43922199
Alignment:
Q  94 tacctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||    
T  43922247 tacctatgaagcatggactccgacacagatacctgacacgacactgaca 43922199  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 23431728 - 23431772
Alignment:
Q  98 tatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  23431728 tatgaagcatggactccgacacggacacctgatacgacactgaca 23431772  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 10171744 - 10171701
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacactga 140  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  10171744 ctatgaagcatggactccaacacggacaccggacacgacactga 10171701  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 32740711 - 32740756
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||    
T  32740711 ctatgaagcacagacttcgacacgaacatctgacacgacactgaca 32740756  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 12843766 - 12843809
Alignment:
Q  99 atgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  12843766 atgaagcatggactccgacacggacacttgacacgacactgaca 12843809  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 54305517 - 54305562
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||    
T  54305517 ctatgaagcatggactccaacacggacacctgacacaacactgaca 54305562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 658722 - 658677
Alignment:
Q  97 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 142  Q
    |||||||||| ||||||||||| | ||||| |||||||||||||||    
T  658722 ctatgaagcacggactccgacatggacacccgacacgacactgaca 658677  T

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