View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11129_high_11 (Length: 380)

Name: NF11129_high_11
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11129_high_11
NF11129_high_11
[»] chr7 (3 HSPs)
chr7 (1-364)||(438552-438915)
chr7 (144-181)||(10692507-10692544)
chr7 (144-184)||(8305360-8305400)
[»] scaffold0001 (1 HSPs)
scaffold0001 (116-180)||(398644-398708)
[»] chr5 (3 HSPs)
chr5 (139-199)||(29587668-29587728)
chr5 (139-200)||(34806153-34806214)
chr5 (145-181)||(15963607-15963643)
[»] chr4 (4 HSPs)
chr4 (137-181)||(25260539-25260583)
chr4 (137-179)||(27131682-27131724)
chr4 (129-175)||(41052607-41052653)
chr4 (147-184)||(3580619-3580655)
[»] chr6 (3 HSPs)
chr6 (137-179)||(2468482-2468524)
chr6 (135-186)||(4323108-4323159)
chr6 (137-182)||(32931500-32931545)
[»] chr3 (3 HSPs)
chr3 (134-200)||(26643285-26643350)
chr3 (146-195)||(4216083-4216132)
chr3 (140-192)||(20167616-20167668)
[»] chr1 (2 HSPs)
chr1 (145-197)||(2551435-2551487)
chr1 (144-200)||(3523378-3523434)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 438552 - 438915
Alignment:
Q  1 gaacatttagacaagttcgattttgaatcgggccaaaccattgacggtttggttcaattttgtatagccaaattattgtaacggttcagctcaggtctga 100  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  438552 gaacatttatacaagttcaattttgaatcgggccaaaccattgacggtttggttcaattttgtatagccaaattgttgtaacggttcagctcaggtctga 438651  T
Q  101 accttgaatagtcatagtgtctgacacaatacaaatacatgtggttacatttaattacttcaattttcttaaattattatcggtatgtacgtgtcagtgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  438652 accttgaatagtcatagtgtctgacacaatacaaatacatgtggttacatttaattacttcaattttcttaaattattattggtatgtacgtgtcagtgt 438751  T
Q  201 gagtattgtgtcaggtgtttgtgtgcctcataggttctacaaacaatcatgtcatacttcagttcctagtcatgttattaatatgctgagtttcactgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  438752 gagtattgtgtcaggtgtttgtgtgcctcataggttctacagacaatcatgtcatacttcagttcctagtcatgttattaatatgctgagtttcactgac 438851  T
Q  301 attaaggtttatcaagaaaaggctattaaggataaagaaaggtaccaagcagaaatggaggatt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  438852 attaaggtttatcaagaaaaggctattaaggataaagaaaggtaccaagcagaaatggaggatt 438915  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 10692544 - 10692507
Alignment:
Q  144 gttacatttaattacttcaattttcttaaattattatc 181  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  10692544 gttacattaaattacttcaattttctttaattattatc 10692507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 8305360 - 8305400
Alignment:
Q  144 gttacatttaattacttcaattttcttaaattattatcggt 184  Q
    |||||||| ||  ||||||||||||||||||||||||||||    
T  8305360 gttacattcaaccacttcaattttcttaaattattatcggt 8305400  T

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Target: scaffold0001 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 398708 - 398644
Alignment:
Q  116 agtgtctgacacaatacaaatacatgtggttacatttaattacttcaattttcttaaattattat 180  Q
    |||||| ||||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  398708 agtgtccgacacaacaccaatacacgtggttacattcaattacttcaattttcttaaattattat 398644  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29587728 - 29587668
Alignment:
Q  139 atgtggttacatttaattacttcaattttcttaaattattatcggtatgtacgtgtcagtg 199  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||| | |||||| |||||    
T  29587728 atgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagtg 29587668  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 34806214 - 34806153
Alignment:
Q  139 atgtggttacatttaattacttcaattttcttaaattattatcggtatgtacgtgtcagtgt 200  Q
    |||| |||||||| || || ||| |||||||||||||||||||||| | |||||||||||||    
T  34806214 atgtagttacattcaagtaattccattttcttaaattattatcggtgtctacgtgtcagtgt 34806153  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 15963607 - 15963643
Alignment:
Q  145 ttacatttaattacttcaattttcttaaattattatc 181  Q
    ||||||||||||||||||||||||||||| |||||||    
T  15963607 ttacatttaattacttcaattttcttaaactattatc 15963643  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 25260583 - 25260539
Alignment:
Q  137 acatgtggttacatttaattacttcaattttcttaaattattatc 181  Q
    |||| |||||||||||||||||||| |||||||||||||||||||    
T  25260583 acatttggttacatttaattacttccattttcttaaattattatc 25260539  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 27131682 - 27131724
Alignment:
Q  137 acatgtggttacatttaattacttcaattttcttaaattatta 179  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  27131682 acatgtggttacattcaattacttccattttcttaaattatta 27131724  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 41052653 - 41052607
Alignment:
Q  129 atacaaatacatgtggttacatttaattacttcaattttcttaaatt 175  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||    
T  41052653 atacacatacatgtggttacatttaattactttcattttcttaaatt 41052607  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 3580619 - 3580655
Alignment:
Q  147 acatttaattacttcaattttcttaaattattatcggt 184  Q
    |||||||||||||||||||||||| |||||||||||||    
T  3580619 acatttaattacttcaattttctt-aattattatcggt 3580655  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 2468482 - 2468524
Alignment:
Q  137 acatgtggttacatttaattacttcaattttcttaaattatta 179  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  2468482 acatgtggttacattcaattacttccattttcttaaattatta 2468524  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 4323159 - 4323108
Alignment:
Q  135 atacatgtggttacatttaattacttcaattttcttaaattattatcggtat 186  Q
    ||||||||||| ||||||||| ||||||||||||| ||||| ||||| ||||    
T  4323159 atacatgtggtaacatttaatcacttcaattttctcaaattgttatcagtat 4323108  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 32931500 - 32931545
Alignment:
Q  137 acatgtggttacatttaattacttcaattttcttaaattattatcg 182  Q
    |||||| |||| ||||||| ||||| ||||||||||||||||||||    
T  32931500 acatgtagttatatttaatcacttctattttcttaaattattatcg 32931545  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 26643285 - 26643350
Alignment:
Q  134 aatacatgtggttacatttaattacttcaattttcttaaattattatcggtatgtacgtgtcagtgt 200  Q
    |||| ||||||||||||| ||||| ||| ||||||||||||||||| | ||||  ||||||||||||    
T  26643285 aataaatgtggttacattcaatta-ttctattttcttaaattattaccagtatcgacgtgtcagtgt 26643350  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 4216083 - 4216132
Alignment:
Q  146 tacatttaattacttcaattttcttaaattattatcggtatgtacgtgtc 195  Q
    |||||||||| |||||||||||||| ||||||||| ||||| ||| ||||    
T  4216083 tacatttaatcacttcaattttctttaattattattggtatctacatgtc 4216132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 20167668 - 20167616
Alignment:
Q  140 tgtggttacatttaattacttcaattttcttaaattattatcggtatgtacgt 192  Q
    |||||||||||| ||| ||||| |||| ||||||||||||| ||||| |||||    
T  20167668 tgtggttacattaaatcacttctatttccttaaattattattggtatctacgt 20167616  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 2551435 - 2551487
Alignment:
Q  145 ttacatttaattacttcaattttcttaaattattatcggtatgtacgtgtcag 197  Q
    ||||||| ||| |||||||||||  ||||||||||||||| | ||||||||||    
T  2551435 ttacattcaatcacttcaatttttgtaaattattatcggtgtctacgtgtcag 2551487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 3523434 - 3523378
Alignment:
Q  144 gttacatttaattacttcaattttcttaaattattatcggtatgtacgtgtcagtgt 200  Q
    |||||||| ||| ||||| ||||| | |||||||||||||| | |||||||||||||    
T  3523434 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 3523378  T

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