View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_high_13 (Length: 323)
Name: NF11129_high_13
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 140 - 308
Target Start/End: Complemental strand, 35163754 - 35163586
Alignment:
| Q |
140 |
ttaaaatatggaaaggaatgtttgaaggttttgtgaagagacaacctttttggatgtagtgacaagacaacataggtaggtctgaaacagagagtttaag |
239 |
Q |
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| T |
35163754 |
ttaaaatatggaaaggaatgtttgaaggttttgtgaagagacaacctttttggatgtagtgacaagacaacataggtaggtctgaaacagagagtttaag |
35163655 |
T |
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| Q |
240 |
gtttgctatgttggatttttggtctggggttatggtacattttgagaccaaggttggagatgaagaagg |
308 |
Q |
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| T |
35163654 |
gtttgctatgttggatttttggtctggggttatggtacattttgagaccaaggttggagatgaagaagg |
35163586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 35163884 - 35163808
Alignment:
| Q |
10 |
gcagagatgaaatcgacgccggcgtcgttgcaagtcaggtaaacatagccctcagagtcggtggttaaacgaccggc |
86 |
Q |
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| T |
35163884 |
gcagtgatgaaatcgacgccggcgtcgttgcaagtcaggtaaacatagccctcagagtcggtggttaaacgaccggc |
35163808 |
T |
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