View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11129_high_14 (Length: 309)

Name: NF11129_high_14
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11129_high_14
NF11129_high_14
[»] scaffold0332 (1 HSPs)
scaffold0332 (5-299)||(5995-6291)


Alignment Details
Target: scaffold0332 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 5995 - 6291
Alignment:
Q  5 tgctacactctaggcccgactttgtagattgagtatttccatgtgtaacttggagactaatcccatgccgagtaggatcacataggcaataaaaccatcc 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  5995 tgctacactctaggcccgactctgtagattgagtatttccatgtgtaacttggagactaatcccaggccgagtaggatcacataggcgataaaaccatcc 6094  T
Q  105 ctcaatagttttaatgtgtgtttctagggtcacagtttgtattttatgcacagactgcacctacacgatcattgctttctatggattcactttgcactat 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6095 ctcaatagttttaatgtgtgtttctagggtcacagttcgtattttatgcacagactgcacctacacgatcattgctttctatggattcactttgcactat 6194  T
Q  205 act--tagatagcagaaaatgattccccctgttattatatcagtccaagaaagaatatggacagtcattttcttctattgaattttcattccctttg 299  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6195 acttatagatagcagaaaatgattccccctgttattatatcagtccaagaaagaatatggacagtcattttcttctattgaattttcattccctttg 6291  T

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