View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11129_high_16 (Length: 262)
Name: NF11129_high_16
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 438240 - 438452
Alignment:
| Q |
11 |
ttggaacaacttaaaagagtctgagaaaacagtaagtgatttatatgcttaaatattattacttgtttgagtgtactatagtatgtaacattgacacttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
438240 |
ttggaacaacttaaaagagtctgagaaaacagtaagtgatttatatgtttaaatattattacttgtttgagtgtactatagtatgtaacattgacacttt |
438339 |
T |
|
| Q |
111 |
atatcgaagacgtgttcgataggagttttnnnnnnnccaaataccaaagcaaaccgttaaatcaaactgaacattaagtgacagttcacgaaccgaacta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
438340 |
atatcgaagacgtgttcgataggagttttaaaaaaaccaaataccaaagcaaaccgttaaatcaaaccgaacattaagtgacagttcatgaaccgaacta |
438439 |
T |
|
| Q |
211 |
aaccagtttggtt |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
438440 |
aaccagtttggtt |
438452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University