View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_high_19 (Length: 222)
Name: NF11129_high_19
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 47964884 - 47964692
Alignment:
| Q |
18 |
cattcaaacaggaaacattgctacccccaacccaaaaaggaaacaaataagtactccataattattatgtataaactaaattaaaatactatatcaaaat |
117 |
Q |
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| T |
47964884 |
cattcaaacaggaaacattgctacccccaacccaaaaaggaaacaaataagtactccataattattatgtataaactaaattaaaatactatatcaaaat |
47964785 |
T |
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| Q |
118 |
atttatcttccaaaattagtatacacactggcttacattatgaaataaaaagaaacacacatgtaacacaaaatttaagattcttctctctgc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47964784 |
atttatcttccaaaattagtatacacactggcttacattatgaaataaaaagaaacacacatgtaacacaaaatttaagattcttctgtctgc |
47964692 |
T |
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