View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_high_22 (Length: 212)
Name: NF11129_high_22
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_high_22 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 43583085 - 43583296
Alignment:
| Q |
1 |
cttagattgttaaagagttcaaaatgcacctatgatgaagtctctcaatatcttaattatgtgcagagaattaatataaataaaaatggcatcatcatcc |
100 |
Q |
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| T |
43583085 |
cttagattgttaaagagttcaaaatgcatctatgatgaagtctctcaatatcttaattatgtgcagagaattaatataaataaaaatggcatcatcatcc |
43583184 |
T |
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| Q |
101 |
agctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaa |
200 |
Q |
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| T |
43583185 |
agctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaa |
43583284 |
T |
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| Q |
201 |
aatttgcaaacg |
212 |
Q |
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| T |
43583285 |
aatttgcaaacg |
43583296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 34675180 - 34675307
Alignment:
| Q |
82 |
aaaaatggcatcatcatccagctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttc |
181 |
Q |
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| T |
34675180 |
aaaaatggcatcatca---agctcatacaattcaccatgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatacttt |
34675276 |
T |
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| Q |
182 |
cctccagaagagcctcaaaaatttgcaaacg |
212 |
Q |
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| T |
34675277 |
ccaccggaagaacctcaaaaatttgcaaacg |
34675307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 12360900 - 12360800
Alignment:
| Q |
110 |
aattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaaaatttgcaa |
209 |
Q |
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| T |
12360900 |
aattcaccatgtgctgcttgcaagtttttgagaaggaagtgcatgccagattgcatatttgctccatatttcccaccagaagaaccacaaaaatttgcaa |
12360801 |
T |
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| Q |
210 |
a |
210 |
Q |
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| T |
12360800 |
a |
12360800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 600699 - 600795
Alignment:
| Q |
110 |
aattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttccctccagaagagcctcaaaaatttg |
206 |
Q |
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||||| || |||||||| ||||| ||| | || |||||||||| | || ||||| ||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
600699 |
aattctccatgtgctgcttgcaagttcctaagaagaaaatgcaaccaagattgcatttttgcaccttatttcccaccagaagagcctcataaatttg |
600795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 591173 - 591222
Alignment:
| Q |
161 |
tgcatctttgcaccttacttccctccagaagagcctcaaaaatttgcaaa |
210 |
Q |
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||||| ||||||||||| ||||| |||||||||||||| || |||||||| |
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| T |
591173 |
tgcatttttgcaccttatttcccaccagaagagcctcataagtttgcaaa |
591222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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