View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11129_low_1 (Length: 699)

Name: NF11129_low_1
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11129_low_1
NF11129_low_1
[»] chr5 (21 HSPs)
chr5 (7-681)||(12802436-12803117)
chr5 (7-681)||(12739613-12740293)
chr5 (242-339)||(39195824-39195924)
chr5 (237-339)||(17097694-17097798)
chr5 (238-338)||(31748412-31748515)
chr5 (237-339)||(21210893-21210998)
chr5 (237-339)||(13089673-13089778)
chr5 (237-339)||(19981877-19981982)
chr5 (237-339)||(42446182-42446287)
chr5 (240-301)||(611942-612005)
chr5 (231-343)||(29463064-29463179)
chr5 (231-343)||(36562940-36563055)
chr5 (201-267)||(39054625-39054691)
chr5 (206-267)||(19521970-19522031)
chr5 (202-267)||(33958226-33958291)
chr5 (232-267)||(2972393-2972428)
chr5 (236-339)||(32872789-32872895)
chr5 (237-267)||(5168257-5168287)
chr5 (202-267)||(35567540-35567605)
chr5 (237-266)||(39195792-39195821)
chr5 (231-267)||(4719719-4719755)
[»] chr4 (37 HSPs)
chr4 (204-335)||(52204892-52205026)
chr4 (237-339)||(18316012-18316117)
chr4 (237-339)||(29227134-29227239)
chr4 (242-339)||(10146980-10147080)
chr4 (237-307)||(38519868-38519940)
chr4 (237-339)||(51255821-51255926)
chr4 (237-301)||(5386447-5386513)
chr4 (238-309)||(149407-149480)
chr4 (237-339)||(39158180-39158285)
chr4 (237-304)||(51577689-51577758)
chr4 (237-307)||(36130277-36130349)
chr4 (203-304)||(19651846-19651949)
chr4 (237-351)||(1816555-1816672)
chr4 (237-339)||(22813613-22813718)
chr4 (243-339)||(50506470-50506568)
chr4 (237-339)||(54000773-54000878)
chr4 (202-267)||(7632428-7632493)
chr4 (202-267)||(24575818-24575883)
chr4 (283-339)||(26600090-26600147)
chr4 (242-310)||(5932685-5932755)
chr4 (237-339)||(2004080-2004185)
chr4 (237-267)||(11068762-11068792)
chr4 (237-267)||(16019551-16019581)
chr4 (237-267)||(19232100-19232130)
chr4 (237-267)||(26910276-26910306)
chr4 (237-267)||(37997328-37997358)
chr4 (217-267)||(38381043-38381093)
chr4 (237-267)||(39440558-39440588)
chr4 (237-267)||(50831722-50831752)
chr4 (231-322)||(53573546-53573639)
chr4 (231-340)||(13196831-13196943)
chr4 (231-264)||(19474040-19474073)
chr4 (230-343)||(20381419-20381537)
chr4 (206-267)||(36123426-36123487)
chr4 (202-267)||(50721711-50721776)
chr4 (239-267)||(336774-336802)
chr4 (239-267)||(50890040-50890068)
[»] chr3 (29 HSPs)
chr3 (234-339)||(39713928-39714036)
chr3 (237-339)||(4494128-4494233)
chr3 (206-339)||(34307432-34307568)
chr3 (204-339)||(31104706-31104844)
chr3 (206-337)||(48346870-48347004)
chr3 (237-339)||(34456865-34456970)
chr3 (202-267)||(52714773-52714838)
chr3 (237-298)||(8502824-8502887)
chr3 (237-301)||(9692800-9692866)
chr3 (206-343)||(10811179-10811319)
chr3 (237-307)||(32145910-32145982)
chr3 (206-267)||(52254105-52254166)
chr3 (231-267)||(6178392-6178428)
chr3 (240-307)||(14207184-14207251)
chr3 (240-307)||(14214932-14214999)
chr3 (242-339)||(25188315-25188416)
chr3 (237-267)||(5114152-5114182)
chr3 (237-267)||(20547957-20547987)
chr3 (270-339)||(39099427-39099497)
chr3 (237-267)||(41309191-41309221)
chr3 (237-267)||(48353071-48353101)
chr3 (202-267)||(36756017-36756082)
chr3 (231-267)||(28539707-28539743)
chr3 (231-267)||(28700529-28700565)
chr3 (231-267)||(35377048-35377084)
chr3 (244-300)||(45753220-45753276)
chr3 (231-267)||(50314693-50314729)
chr3 (217-265)||(50559180-50559228)
chr3 (237-265)||(54099325-54099353)
[»] chr8 (26 HSPs)
chr8 (237-339)||(44061792-44061897)
chr8 (237-339)||(15716867-15716972)
chr8 (244-339)||(12241154-12241252)
chr8 (240-339)||(37172138-37172240)
chr8 (237-339)||(1068681-1068786)
chr8 (237-339)||(33107758-33107863)
chr8 (237-304)||(44090961-44091030)
chr8 (206-339)||(9630167-9630303)
chr8 (237-314)||(5600904-5600983)
chr8 (237-314)||(5639637-5639716)
chr8 (237-322)||(45405893-45405980)
chr8 (240-339)||(26026974-26027076)
chr8 (237-300)||(25987718-25987783)
chr8 (237-339)||(34435628-34435733)
chr8 (276-339)||(9629679-9629743)
chr8 (237-301)||(44825517-44825583)
chr8 (237-339)||(33451456-33451560)
chr8 (231-267)||(10902773-10902809)
chr8 (179-343)||(39211054-39211225)
chr8 (237-267)||(10731620-10731650)
chr8 (201-264)||(32020433-32020498)
chr8 (206-267)||(6445220-6445281)
chr8 (242-304)||(28772053-28772117)
chr8 (231-267)||(10592247-10592283)
chr8 (217-337)||(10839376-10839499)
chr8 (231-267)||(37133829-37133865)
[»] chr2 (29 HSPs)
chr2 (237-339)||(37316706-37316811)
chr2 (237-339)||(31578509-31578614)
chr2 (244-339)||(44239118-44239216)
chr2 (237-339)||(11965868-11965973)
chr2 (246-323)||(43057148-43057227)
chr2 (237-339)||(18510750-18510855)
chr2 (237-339)||(37731091-37731196)
chr2 (279-339)||(2427890-2427951)
chr2 (237-339)||(8847562-8847668)
chr2 (242-350)||(14871951-14872062)
chr2 (240-343)||(6511444-6511550)
chr2 (248-343)||(40443135-40443233)
chr2 (250-337)||(40504314-40504404)
chr2 (250-301)||(1079053-1079106)
chr2 (237-304)||(32944431-32944500)
chr2 (237-267)||(34945057-34945087)
chr2 (270-350)||(14877099-14877180)
chr2 (202-267)||(19109060-19109125)
chr2 (238-267)||(19642673-19642702)
chr2 (202-267)||(22416252-22416317)
chr2 (231-267)||(1907730-1907766)
chr2 (237-265)||(7258530-7258558)
chr2 (239-267)||(14871715-14871743)
chr2 (231-267)||(18846679-18846715)
chr2 (239-267)||(19843561-19843589)
chr2 (237-310)||(19916730-19916805)
chr2 (231-267)||(27490697-27490733)
chr2 (231-300)||(31548377-31548448)
chr2 (231-267)||(44977466-44977502)
[»] chr1 (19 HSPs)
chr1 (237-336)||(4857985-4858087)
chr1 (237-339)||(40439731-40439836)
chr1 (237-339)||(47642498-47642603)
chr1 (245-314)||(23332352-23332423)
chr1 (237-348)||(38878783-38878897)
chr1 (273-343)||(45008051-45008122)
chr1 (237-339)||(7918953-7919058)
chr1 (237-304)||(48858898-48858967)
chr1 (206-267)||(35369743-35369804)
chr1 (237-307)||(48983592-48983664)
chr1 (240-307)||(17082667-17082736)
chr1 (237-339)||(42468667-42468772)
chr1 (206-267)||(9987995-9988056)
chr1 (244-339)||(27742697-27742789)
chr1 (230-290)||(41070890-41070952)
chr1 (237-267)||(44519118-44519148)
chr1 (202-267)||(37275000-37275065)
chr1 (231-267)||(48261208-48261244)
chr1 (231-267)||(49065331-49065367)
[»] chr7 (29 HSPs)
chr7 (237-339)||(32777598-32777703)
chr7 (237-339)||(43081781-43081886)
chr7 (237-339)||(12007077-12007182)
chr7 (237-337)||(43807706-43807809)
chr7 (244-339)||(28249461-28249559)
chr7 (242-357)||(29723798-29723916)
chr7 (237-339)||(33057454-33057559)
chr7 (237-339)||(33845117-33845222)
chr7 (242-339)||(2008723-2008823)
chr7 (237-307)||(37352185-37352257)
chr7 (237-339)||(15325531-15325636)
chr7 (233-339)||(26749075-26749184)
chr7 (237-304)||(34978371-34978440)
chr7 (237-304)||(45419988-45420057)
chr7 (237-304)||(13152667-13152737)
chr7 (278-343)||(10578185-10578251)
chr7 (206-339)||(21103056-21103192)
chr7 (206-267)||(31445361-31445422)
chr7 (231-267)||(4292496-4292532)
chr7 (240-343)||(31711824-31711930)
chr7 (206-290)||(47448870-47448956)
chr7 (202-267)||(1284455-1284518)
chr7 (237-267)||(10700152-10700182)
chr7 (237-267)||(35822941-35822971)
chr7 (237-267)||(40854621-40854651)
chr7 (202-267)||(18505813-18505878)
chr7 (202-267)||(32453533-32453598)
chr7 (206-267)||(35098670-35098731)
chr7 (231-267)||(24532909-24532945)
[»] scaffold0618 (1 HSPs)
scaffold0618 (237-304)||(8880-8949)
[»] chr6 (13 HSPs)
chr6 (237-339)||(18064981-18065086)
chr6 (244-336)||(14910258-14910352)
chr6 (237-339)||(8505664-8505770)
chr6 (237-304)||(8645383-8645452)
chr6 (237-339)||(33712395-33712500)
chr6 (240-339)||(5739655-5739757)
chr6 (231-267)||(22079530-22079566)
chr6 (273-339)||(21467934-21468001)
chr6 (242-340)||(12588264-12588367)
chr6 (237-267)||(31883270-31883300)
chr6 (238-267)||(3853274-3853303)
chr6 (176-267)||(18737534-18737628)
chr6 (231-267)||(26595417-26595453)
[»] scaffold0201 (1 HSPs)
scaffold0201 (237-339)||(8547-8652)
[»] scaffold0034 (2 HSPs)
scaffold0034 (242-301)||(101830-101891)
scaffold0034 (240-307)||(22656-22725)
[»] scaffold0343 (1 HSPs)
scaffold0343 (237-302)||(8914-8981)
[»] scaffold0184 (1 HSPs)
scaffold0184 (237-339)||(13448-13553)
[»] scaffold0078 (1 HSPs)
scaffold0078 (237-339)||(59291-59396)


Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 7 - 681
Target Start/End: Original strand, 12802436 - 12803117
Alignment:
Q  7 ggagcagcacagacttctacgctagattggagaggatggaggtggaggggtattttgggcatatgaattttgggttgatggagtatgggagagtgaagcg 106  Q
    |||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12802436 ggagcatcactgacttctacgctagactggagaggatggtggtggaggggtattttgggcatatgaattttgggttgatggagtatgggagagtgaagcg 12802535  T
Q  107 aaggagtatgtgaggaaagaggatatacctagtggtaaaaaacactattgatatcttttcactatttagttgagaaatgatatttcaacgaccatt---- 202  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  12802536 aaggagtatgtgaggaaagaggatatacctggtggtaaaaaacactattgatatcttttcactatttagttgagaaatgatatttcaacgaccatttttt 12802635  T
Q  203 gataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgt 300  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  12802636 gataactttttctttcatacttgtatagtgtttatactttctctctctattgctttgatttttgtgcttctacctaaatttctttgtataatttggttgt 12802735  T
Q  301 ccaacaaattatcataaaaaatattgttcaaataacattcctcgtttaatttttgttttgtgtcaacaatttattgttattgaattgaaactacttgatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12802736 ccaacaaattatcataaaaaatattgttcaaataacattcctcgtttaatttttgttttgtgtcaacaatttattgttattgaattgaaactacttgatg 12802835  T
Q  401 agctacttatgaatcaacttaatgttgcacaattgttgggggagtctaaattaattttaaatatgtgaaattaattttgtcatatttgaatattccatag 500  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  12802836 agctacttatgaatcaacttaatgttgcacaatttctgggtgagtctaaattaattttaaatgtgtgaaattaattttgtcatgttcgaatattccatag 12802935  T
Q  501 tagaattgattttgcataattgactctaaactagaagctacactt--tagtttttatttcaacaatcaattttaacgttcaattttcttttatatgaatg 598  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12802936 tagaattggttttgcataattgactctaaactagaagctacactttatagtttttatttcaacaatcaattttaacgttcaatttt-ttttatatgaatg 12803034  T
Q  599 tatcgaaacataaatatacgtttacatcaactcatttttaacctgaaataatgcataccaatttatttatttttagatcacac 681  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12803035 tatcgaaacataaataaatgtttacatcaactcatttttaacctgaaataatgcataccaatttatttatttttagatcacac 12803117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 7 - 681
Target Start/End: Original strand, 12739613 - 12740293
Alignment:
Q  7 ggagcagcacagacttctacgctagattggagaggatggaggtggaggggtattttgggcatatgaattttgggttgatggagtatgggagagtgaagcg 106  Q
    |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12739613 ggagcatcactgacttctacgctagattggagaggatggtggtggaggggtattttgggcatatgaattttgggttgatggagtatgggagagtgaagcg 12739712  T
Q  107 aaggagtatgtgaggaaagaggatatacctagtggtaaaaaacactattgatatcttttcactatttagttgagaaatgatatttcaacgaccatt---- 202  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  12739713 aaggagtatgtgaggaaagaggatatacctggtggtaaaaaacactattgatatcttttcactatttagttgagaaatgatatttcaacgaccatttttt 12739812  T
Q  203 gataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgt 300  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  12739813 gataactttctctttcatacttgtataatgtttatactttctctctctattgctttgatttttgtgcttctacctaaatttctttgtataatttggttgt 12739912  T
Q  301 ccaacaaattatcataaaaaatattgttcaaataacattcctcgtttaatttttgttttgtgtcaacaatttattgttattgaattgaaactacttgatg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12739913 ccaacaaattatcataaaaaatattgttcaaataacattcctcgtttaatttctgttttgtgtcaacaatttattgttattgaattgaaactacttgatg 12740012  T
Q  401 agctacttatgaatcaacttaatgttgcacaattgttgggggagtctaaattaattttaaatatgtgaaattaattttgtcatatttgaatattccatag 500  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  12740013 agctacttatgaatcaacttaatgttgcacaatttctgggtgagtctaaattaattttaaatgtgtgaaattaattttgtcatgttcgaatattccatag 12740112  T
Q  501 tagaattgattttgcataattgactctaaactagaagctacactt--tagtttttatttcaacaatcaattttaacgttcaattttcttttatatgaatg 598  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12740113 tagaattggttttgcataattgactctaaactagaagctacactttatagtttttatttcaacaatcaattttaacgttcaattt--ttttatatgaatg 12740210  T
Q  599 tatcgaaacataaatatacgtttacatcaactcatttttaacctgaaataatgcataccaatttatttatttttagatcacac 681  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12740211 tatcgaaacataaataaatgtttacatcaactcatttttaacctgaaataatgcataccaatttatttatttttagatcacac 12740293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 39195824 - 39195924
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaataacat 338  Q
    |||||||||||||||||||||||||| ||  ||| |||||||||||||||||| ||||||||||||||||| ||| | ||||| ||||||||||||||||    
T  39195824 tctctctctattgctttgatttttgtatcactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaaaaattgttcaaataacat 39195923  T
Q  339 t 339  Q
    |    
T  39195924 t 39195924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 17097798 - 17097694
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaatattgttcaaata 334  Q
    |||||||||| |||||| ||||||||||||| ||  ||| ||| |||||||||||||||| ||||||||||||||| ||| || ||||  ||||||||||    
T  17097798 tactttctctttctattactttgatttttgtgtcactacctaattttctttgtataatttagttgtccaacaaattgtcacaagaaatggtgttcaaata 17097699  T
Q  335 acatt 339  Q
    |||||    
T  17097698 acatt 17097694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 31748412 - 31748515
Alignment:
Q  238 actttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaata 334  Q
    ||||||||| ||||||||||||||||||||  | | || ||||||||||||||||||||| |||||||| || || ||| ||||||| ||||||||||||    
T  31748412 actttctctatctattgctttgatttttgtgctacaacctaaatttctttgtataatttgattgtccaataagttgtcacaaaaaatgattgttcaaata 31748511  T
Q  335 acat 338  Q
    ||||    
T  31748512 acat 31748515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 21210893 - 21210998
Alignment:
Q  237 tactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    |||||||||||||||||||||| ||||||||  | |||| |||||||||||||||||| ||||||| ||| || || ||| | |||||  ||||||||||    
T  21210893 tactttctctctctattgctttaatttttgtactactacctaaatttctttgtataatgtggttgttcaataagttgtcacataaaaaggttgttcaaat 21210992  T
Q  334 aacatt 339  Q
    ||||||    
T  21210993 aacatt 21210998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 13089778 - 13089673
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||| |||||||||||||||||||||||| |  |||| ||||||||||||||||||||  |||| ||| |  || |||||| ||||  ||||||||||    
T  13089778 tactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttaattgttcaaaaggttgtcataagaaatggttgttcaaat 13089679  T
Q  334 aacatt 339  Q
    ||||||    
T  13089678 aacatt 13089673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 19981982 - 19981877
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    |||||||||| |||||| |||||||||||||  |  ||  ||||||| ||||||||||||  |||||||||||||| |||||| ||||| ||||| ||||    
T  19981982 tactttctctttctattactttgatttttgtgccactatctaaatttttttgtataatttaattgtccaacaaattgtcataagaaaatgttgtttaaat 19981883  T
Q  334 aacatt 339  Q
    ||||||    
T  19981882 aacatt 19981877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 42446287 - 42446182
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    |||||| ||||||||||||||||||||||||  |  ||| ||||||||||||||| ||||||||||| || |  || ||| || ||||| ||||||||||    
T  42446287 tactttttctctctattgctttgatttttgtgccattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaat 42446188  T
Q  334 aacatt 339  Q
    ||||||    
T  42446187 aacatt 42446182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 611942 - 612005
Alignment:
Q  240 tttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtc 301  Q
    |||||||||||| ||||||||||||||| |  |||| |||||||||||||||||||| ||||||    
T  611942 tttctctctctactgctttgatttttgtgtcactacctaaatttctttgtataatttagttgtc 612005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 343
Target Start/End: Original strand, 29463064 - 29463179
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgt 327  Q
    ||||| || ||||||||||||||||||||||||||||  |  |||| | ||||||||||||| || |||||||| |||| || |||  ||||||  ||||    
T  29463064 tgtttttattttctctctctattgctttgatttttgtgccaatactcatatttctttgtatatttaggttgtcccacaagttgtcaacaaaaatggttgt 29463163  T
Q  328 tcaaataacattcctc 343  Q
    |||||||||| |||||    
T  29463164 tcaaataacactcctc 29463179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 343
Target Start/End: Complemental strand, 36563055 - 36562940
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgt 327  Q
    ||||| ||||||||||||||||||||| | ||||||| ||  ||| | ||||||||||| || |||||||||||||||| || ||  || |||   ||||    
T  36563055 tgtttttactttctctctctattgcttaggtttttgtgtcaataccttaatttctttgtgtagtttggttgtccaacaagttgtcccaacaaagggttgt 36562956  T
Q  328 tcaaataacattcctc 343  Q
    ||||||||||||||||    
T  36562955 tcaaataacattcctc 36562940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 39054625 - 39054691
Alignment:
Q  201 ttgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||| |||||||| ||||| |||  |||  ||||| |||||||||||||||||||||||||||||||    
T  39054625 ttgacaactttctctttcacactcacattatgtttttactttctctctctattgctttgatttttgt 39054691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 19522031 - 19521970
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||| |||||||||  |||  | ||| |||||||||||||||||||||||||||||||    
T  19522031 aactttctctttcatactcacattatctttttactttctctctctattgctttgatttttgt 19521970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 33958291 - 33958226
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||| |||||||  |||  | ||| ||||||||||||||||||||||| |||||||    
T  33958291 tgataactttctatatcatactcacattatatttttactttctctctctattgctttggtttttgt 33958226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 2972393 - 2972428
Alignment:
Q  232 gtttatactttctctctctattgctttgatttttgt 267  Q
    |||| |||||||||||||||||||||||||||||||    
T  2972393 gtttttactttctctctctattgctttgatttttgt 2972428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 32872895 - 32872789
Alignment:
Q  236 atactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaa 332  Q
    ||||||||| | ||||||||||||| |||||| |  |||| ||||||||||| |||| |||| ||||||||||| || ||| || |||   |||||||||    
T  32872895 atactttctttttctattgctttgacttttgtgttactacctaaatttctttttatattttgattgtccaacaagttgtcacaagaaagggttgttcaaa 32872796  T
Q  333 taacatt 339  Q
    |||||||    
T  32872795 taacatt 32872789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 5168257 - 5168287
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  5168257 tactttctctctctattgctttgatttttgt 5168287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 35567540 - 35567605
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||||| | ||||| || |||  | ||| |||||||||||||||||||||||| ||||||    
T  35567540 tgataactttctctctcatatttacattatatttttactttctctctctattgctttgaattttgt 35567605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 266
Target Start/End: Original strand, 39195792 - 39195821
Alignment:
Q  237 tactttctctctctattgctttgatttttg 266  Q
    ||||||||||||||||||||||||||||||    
T  39195792 tactttctctctctattgctttgatttttg 39195821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 4719719 - 4719755
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  4719719 tgtttttactttttctctctattgctttgatttttgt 4719755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 52204892 - 52205026
Alignment:
Q  204 ataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtc 301  Q
    |||| ||||| |||||||||  ||| || ||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||    
T  52204892 ataattttctctttcatactcacattgtttttctactttctctctctattgctttgatttttgtgtcactacttaaatttctttttataatttggttgtc 52204991  T
Q  302 caacaaattatcataa-aaaatattgttcaaataa 335  Q
    |||||| ||||||||| |||| |||||||||||||    
T  52204992 caacaagttatcataagaaaagattgttcaaataa 52205026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 18316012 - 18316117
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||||||| |||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||| || |||||| ||||  ||||||||||    
T  18316012 tactttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaat 18316111  T
Q  334 aacatt 339  Q
    ||||||    
T  18316112 aacatt 18316117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 29227239 - 29227134
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||||||||||||||||||||| ||||| ||  ||| |||||||||||||||||| ||||||||||||||||| ||| | |||||  ||||||||||    
T  29227239 tactttctctctctattgctttgatatttgtgtcactacctaaatttctttgtataatatggttgtccaacaaattgtcacataaaaaggttgttcaaat 29227140  T
Q  334 aacatt 339  Q
    ||||||    
T  29227139 aacatt 29227134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 10147080 - 10146980
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacat 338  Q
    ||||||||| ||||||| |||||||| ||  ||| ||||||||||||||||||||| ||||||||||| |||||| || |||| |||||| |||||||||    
T  10147080 tctctctcttttgcttttatttttgtgtcactacctaaatttctttgtataatttgattgtccaacaagttatcacaagaaatgattgtttaaataacat 10146981  T
Q  339 t 339  Q
    |    
T  10146980 t 10146980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 38519868 - 38519940
Alignment:
Q  237 tactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaacaa 307  Q
    |||||||||||||||||||||||||||||||    ||| ||||||||||||||| ||||||||||||||||||    
T  38519868 tactttctctctctattgctttgatttttgtgccactatttaaatttctttgtaaaatttggttgtccaacaa 38519940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 51255821 - 51255926
Alignment:
Q  237 tactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||||||||||||||||||||||||||||    |||  |||||||||||||| |||||||||||||||||| || ||| || ||||  |||| |||||    
T  51255821 tactttctctctctattgctttgatttttgtgccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaat 51255920  T
Q  334 aacatt 339  Q
    ||||||    
T  51255921 aacatt 51255926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 5386447 - 5386513
Alignment:
Q  237 tactttctctctctattgctttgatttt--tgtttctacttaaatttctttgtataatttggttgtc 301  Q
    ||||||||||||||||||||||||||||  |||| |||  |||||||||||||||||||| ||||||    
T  5386447 tactttctctctctattgctttgatttttgtgttactatctaaatttctttgtataatttagttgtc 5386513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 149480 - 149407
Alignment:
Q  238 actttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaat 309  Q
    |||||||||||||||||||||  ||||||| ||  ||| |||||||||||||||| ||| ||||||||||||||    
T  149480 actttctctctctattgctttagtttttgtgtcactacctaaatttctttgtatattttagttgtccaacaaat 149407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 39158180 - 39158285
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||||||| ||||||| |||| |||||||  |  ||| |||||||||||||||||||||||||||||| || || ||| || ||||  ||||||||||    
T  39158180 tactttctctttctattgttttggtttttgtgccgctacctaaatttctttgtataatttggttgtccaataagttgtcacaataaatggttgttcaaat 39158279  T
Q  334 aacatt 339  Q
    ||||||    
T  39158280 aacatt 39158285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 51577689 - 51577758
Alignment:
Q  237 tactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaa 304  Q
    |||||||||||||||||||||||||||||||    |||| ||||||||||| |||||||| |||||||||    
T  51577689 tactttctctctctattgctttgatttttgtgccactacctaaatttctttatataatttagttgtccaa 51577758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 36130349 - 36130277
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaa 307  Q
    |||||| |||||||||||| ||||||||||| ||  ||| |||||||||||||||||| || |||||||||||    
T  36130349 tactttttctctctattgccttgatttttgtgtcattacctaaatttctttgtataatgtgattgtccaacaa 36130277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 19651949 - 19651846
Alignment:
Q  203 gataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgt 300  Q
    ||||||||||| ||||||| || |||  | ||| |||||| | |||||||| ||||||||||| | ||  ||| |||||||||||||||||||| |||||    
T  19651949 gataactttctttttcatatttacattatttttttactttatttctctattactttgatttttatgtcactacctaaatttctttgtataatttagttgt 19651850  T
Q  301 ccaa 304  Q
    ||||    
T  19651849 ccaa 19651846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 351
Target Start/End: Complemental strand, 1816672 - 1816555
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||| |||||||||||||||||||||||| |  |||| ||| ||| ||| ||||||||  ||||| || | ||||||| || |||| |||||||| ||    
T  1816672 tactttatctctctattgctttgatttttgtgtcactacctaattttttttatataatttaattgtctaaaagattatcacaagaaatgattgttcatat 1816573  T
Q  334 aacattcctcgtttaatt 351  Q
    |||||| ||| |||||||    
T  1816572 aacattgctcttttaatt 1816555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 22813718 - 22813613
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    |||||| ||| |||||||||||||||||||| |  |||| ||||||||||| ||||||||  ||||||||||| || ||| || ||||  ||||| ||||    
T  22813718 tactttttctttctattgctttgatttttgtgtcactacctaaatttctttatataatttaattgtccaacaagttgtcacaagaaaaagttgtttaaat 22813619  T
Q  334 aacatt 339  Q
    ||||||    
T  22813618 aacatt 22813613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 50506470 - 50506568
Alignment:
Q  243 ctctctctattgctttgatttt-tgtttctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaataacatt 339  Q
    ||||| |||||||||||||||| ||   |||| |||||||||||||||||||| ||||||||| |  || ||| || ||||| ||||||||||||||||    
T  50506470 ctctccctattgctttgattttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatagttgttcaaataacatt 50506568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 54000773 - 54000878
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaat 333  Q
    |||||||||||||||||||||  |||| |||  |  ||| |||||||||||||||||||| ||||||||| |  || ||| || ||||| ||||||||||    
T  54000773 tactttctctctctattgcttaaatttgtgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaataaatagttgttcaaat 54000872  T
Q  334 aacatt 339  Q
    ||||||    
T  54000873 aacatt 54000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 7632493 - 7632428
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||| ||||| |||||||||  |||  | ||| |||||||||||||||||||||||||||||||    
T  7632493 tgataattttctctttcatactcacattatatttttactttctctctctattgctttgatttttgt 7632428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 24575883 - 24575818
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||| ||||| | |||||||| ||| || ||| ||||||||||||||||||||||| |||||||    
T  24575883 tgataaatttctctctcatacttacattgtctttttactttctctctctattgctttggtttttgt 24575818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 26600147 - 26600090
Alignment:
Q  283 tttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaataacatt 339  Q
    |||||||||| ||||||||||||||||| ||| | |||||| ||||||||||||||||    
T  26600147 tttgtataatgtggttgtccaacaaattgtcacataaaaatgttgttcaaataacatt 26600090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 5932755 - 5932685
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaatt 310  Q
    ||||| ||||||| |||||||||||| ||  ||| ||||||||||||||||||||  |||||||| |||||    
T  5932755 tctctatctattgttttgatttttgtgtcactacctaaatttctttgtataatttaattgtccaaaaaatt 5932685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 2004185 - 2004080
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    ||||||||||||  ||||||||||||||||| |  |||| ||||||||||| ||| ||||| ||||| || |  |||||| || ||||  ||||||||||    
T  2004185 tactttctctctacattgctttgatttttgtatcactacctaaatttctttatattatttgattgtctaataggttatcacaagaaaaggttgttcaaat 2004086  T
Q  334 aacatt 339  Q
    ||||||    
T  2004085 aacatt 2004080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 11068762 - 11068792
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  11068762 tactttctctctctattgctttgatttttgt 11068792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 16019551 - 16019581
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  16019551 tactttctctctctattgctttgatttttgt 16019581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 19232130 - 19232100
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  19232130 tactttctctctctattgctttgatttttgt 19232100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 26910276 - 26910306
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  26910276 tactttctctctctattgctttgatttttgt 26910306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 37997328 - 37997358
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  37997328 tactttctctctctattgctttgatttttgt 37997358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 38381093 - 38381043
Alignment:
Q  217 tcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||| |||  ||||| || ||||||||||||||||||||||||||||    
T  38381093 tcatacttacattatgtttttattttctctctctattgctttgatttttgt 38381043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 39440558 - 39440588
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  39440558 tactttctctctctattgctttgatttttgt 39440588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 50831752 - 50831722
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  50831752 tactttctctctctattgctttgatttttgt 50831722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 53573546 - 53573639
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat 322  Q
    |||| ||||||||||| ||||||| ||| |||||||||||  ||| || |||||||| |||| ||||||||||   |||||||||  |||||||    
T  53573546 tgttgatactttctctttctattgttttaatttttgtttcaatacctatatttctttatatattttggttgtcatccaaattatctcaaaaaat 53573639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 340
Target Start/End: Complemental strand, 13196943 - 13196831
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgt 327  Q
    ||||| |||||||||| || ||| |||||||||||||| |  ||||||||||||||| |||| |||| || | ||| || || ||  || ||||| ||||    
T  13196943 tgtttttactttctctatcgattactttgatttttgttccaatacttaaatttctttatatattttgattttacaaaaagttgtcccaacaaatagttgt 13196844  T
Q  328 tcaaataacattc 340  Q
    |||||||||||||    
T  13196843 tcaaataacattc 13196831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 19474073 - 19474040
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttt 264  Q
    |||||||||||| |||||||||||||||||||||    
T  19474073 tgtttatactttatctctctattgctttgatttt 19474040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 20381419 - 20381537
Alignment:
Q  230 gtgtttatactttctctctctattgctttgatttttgttt----ctacttaaatttctttgtataatttggttgtccaacaaattat-cataaaaaatat 324  Q
    |||||| |||||||||||  |||||||||| |||||||||     |||||| |||| ||| |||| |||||||||||||||| || | || | ||||  |    
T  20381419 gtgtttttactttctctcaatattgctttggtttttgtttttcaatacttagatttatttatatattttggttgtccaacaagttgtacaaacaaaaggt 20381518  T
Q  325 tgttcaaataacattcctc 343  Q
    | |||||||||||||||||    
T  20381519 tattcaaataacattcctc 20381537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 36123487 - 36123426
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||| | |||||||| |||  | ||| ||||||||||||||||| |||||||||||||    
T  36123487 aactttctctctcatacttacattatatttttactttctctctctattactttgatttttgt 36123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 50721776 - 50721711
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||||| |||||||||  |||  | ||| ||||||||||||||| ||||||| |||||||    
T  50721776 tgataactttctctttcatactcacattatatttttactttctctctctactgctttggtttttgt 50721711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 336802 - 336774
Alignment:
Q  239 ctttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||    
T  336802 ctttctctctctattgctttgatttttgt 336774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 50890068 - 50890040
Alignment:
Q  239 ctttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||    
T  50890068 ctttctctctctattgctttgatttttgt 50890040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 39714036 - 39713928
Alignment:
Q  234 ttatactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttca 330  Q
    |||||||||||||||||||||||||||||||||| |  |||  |||| || |||||||||||||||||||||||||||||||| |||||||  |||||||    
T  39714036 ttatactttctctctctattgctttgatttttgtgttactatctaaaattttttgtataatttggttgtccaacaaattatcacaaaaaatggttgttca 39713937  T
Q  331 aataacatt 339  Q
    |||||||||    
T  39713936 aataacatt 39713928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 4494233 - 4494128
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||||||| |||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||| || |||||| ||||  ||||||||||    
T  4494233 tactttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaat 4494134  T
Q  334 aacatt 339  Q
    ||||||    
T  4494133 aacatt 4494128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 206 - 339
Target Start/End: Complemental strand, 34307568 - 34307432
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtcca 303  Q
    |||||||| |||||||||  ||| ||  || |||||||||| |||||||||||| ||||||| ||  ||| |||||||||||||||||||||||||||||    
T  34307568 aactttctctttcatactcacattgttcttctactttctctttctattgctttggtttttgtatcactacctaaatttctttgtataatttggttgtcca 34307469  T
Q  304 acaaattatcataa-aaaatattgttcaaataacatt 339  Q
    | || || ||| || |||  |||||||||||||||||    
T  34307468 ataagttgtcacaagaaaggattgttcaaataacatt 34307432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 204 - 339
Target Start/End: Original strand, 31104706 - 31104844
Alignment:
Q  204 ataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtc 301  Q
    |||||||||| ||||||| |  ||| ||  || |||||||||||||||||| |||||||||||| |  |||| |||||||||| ||||||||| ||||||    
T  31104706 ataactttctctttcatattaacattgtccttctactttctctctctattgttttgatttttgtgtcactacctaaatttcttcgtataatttagttgtc 31104805  T
Q  302 caacaaattatcataa-aaaatattgttcaaataacatt 339  Q
     |||||||| ||| || ||||  ||||||||||||||||    
T  31104806 aaacaaattgtcacaagaaaaagttgttcaaataacatt 31104844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 206 - 337
Target Start/End: Original strand, 48346870 - 48347004
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtcca 303  Q
    |||||||| ||||||||||  ||  ||||| ||||||||||||||||||||||| ||||||| ||  || | | ||||||||||||| || ||||||||     
T  48346870 aactttctctttcatacttatattttgtttttactttctctctctattgctttggtttttgtgtcaatattcatatttctttgtatatttaggttgtccc 48346969  T
Q  304 acaaattatcataaaaaata-ttgttcaaataaca 337  Q
    ||||||| |||  ||||||| ||||||||||||||    
T  48346970 acaaattgtcaacaaaaatagttgttcaaataaca 48347004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 34456865 - 34456970
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||||||||||||||||||| ||||||||  |  ||| |||||||||||||||||||| |||||| || | ||| ||| || |||| |||||||||||    
T  34456865 tactttctctctctattgctttaatttttgtgccaatacctaaatttctttgtataatttagttgtctaaaagattgtcacaagaaataattgttcaaat 34456964  T
Q  334 aacatt 339  Q
    | ||||    
T  34456965 atcatt 34456970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 52714773 - 52714838
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||||| | |||||||| |||  | ||| |||||||||||||||||||||||||||||||    
T  52714773 tgataactttctctctcatacttacattatatttttactttctctctctattgctttgatttttgt 52714838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 8502887 - 8502824
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggtt 298  Q
    ||||||||||||||||||||||||||||| | ||  ||| |||||||||||||||| |||||||    
T  8502887 tactttctctctctattgctttgatttttatctcaatacataaatttctttgtatattttggtt 8502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 9692800 - 9692866
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtc 301  Q
    ||||||||||||||||||||||||||||||| |  || | ||| |||||||||||||||| ||||||    
T  9692800 tactttctctctctattgctttgatttttgtgtcactgcctaactttctttgtataatttagttgtc 9692866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 343
Target Start/End: Original strand, 10811179 - 10811319
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtcca 303  Q
    |||||||| | |||||||  ||| |||||| ||| ||||||||||||||||||| | ||||| ||  |||| | ||||||||||||| || ||||||||     
T  10811179 aactttctctctcatactcacattgtgtttttaccttctctctctattgctttggtatttgtgtcaatactcatatttctttgtatatttaggttgtccc 10811278  T
Q  304 acaaattatcataaaaaat-attgttcaaataacattcctc 343  Q
    | || || |||  ||||||  |||||||||||||| |||||    
T  10811279 aaaagttgtcaacaaaaatggttgttcaaataacactcctc 10811319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 32145982 - 32145910
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaa 307  Q
    |||||||||||||||||| |||||||||||| |  |||| |||||||||||||| |||||  || ||||||||    
T  32145982 tactttctctctctattgttttgatttttgtgtcactacctaaatttctttgtaaaatttaattatccaacaa 32145910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 52254166 - 52254105
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||| | ||||||| |||| || ||| ||||||||||||||||||||||| |||||||    
T  52254166 aactttctctctcatactcgcattgtctttttactttctctctctattgctttggtttttgt 52254105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 6178428 - 6178392
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6178428 tgtttttactttctctctctattgctttgatttttgt 6178392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 14207251 - 14207184
Alignment:
Q  240 tttctctctctattgctttgatttttgtttctacttaaatttctttgtataatttggttgtccaacaa 307  Q
    ||||||||||||||||||||||||||||    || || ||||||||||||| |||| |||||| ||||    
T  14207251 tttctctctctattgctttgatttttgtgcggacctacatttctttgtatattttgattgtcccacaa 14207184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 14214999 - 14214932
Alignment:
Q  240 tttctctctctattgctttgatttttgtttctacttaaatttctttgtataatttggttgtccaacaa 307  Q
    ||||||||||||||||||||||||||||    || || ||||||||||||| |||| |||||| ||||    
T  14214999 tttctctctctattgctttgatttttgtgcggacctacatttctttgtatattttgattgtcccacaa 14214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 25188416 - 25188315
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata--ttgttcaaataaca 337  Q
    ||||||||||||||||||||||| || ||  ||| ||||||||||||||| |||| |||||| || |  || ||| |||||| |  ||||||||||||||    
T  25188416 tctctctctattgctttgattttggtgtcattacctaaatttctttgtattatttagttgtctaataggttgtcacaaaaaaaaggttgttcaaataaca 25188317  T
Q  338 tt 339  Q
    ||    
T  25188316 tt 25188315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 5114152 - 5114182
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  5114152 tactttctctctctattgctttgatttttgt 5114182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 20547987 - 20547957
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  20547987 tactttctctctctattgctttgatttttgt 20547957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 39099427 - 39099497
Alignment:
Q  270 ctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacatt 339  Q
    |||| ||||||||||||||||||||  |||||||| |  || ||| ||||||| |||||||||||||||||    
T  39099427 ctacctaaatttctttgtataatttaattgtccaaaatgttgtcacaaaaaataattgttcaaataacatt 39099497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 41309191 - 41309221
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  41309191 tactttctctctctattgctttgatttttgt 41309221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 48353071 - 48353101
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  48353071 tactttctctctctattgctttgatttttgt 48353101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 36756082 - 36756017
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||| | | ||||||| ||||  | ||| || ||||||||||||||||||||||||||||    
T  36756082 tgataactttttctctcatactcgcattatatttttattttctctctctattgctttgatttttgt 36756017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 28539743 - 28539707
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  28539743 tgtttttactttctctctctattgctttgacttttgt 28539707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 28700529 - 28700565
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  28700529 tgtttttactttctctctctattgctttggtttttgt 28700565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 35377084 - 35377048
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  35377084 tgtttttactttctttctctattgctttgatttttgt 35377048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 45753220 - 45753276
Alignment:
Q  244 tctctctattgctttgatttttgtttctacttaaatttctttgtataatttggttgt 300  Q
    |||||||||||||||| | |||||  |||| ||| ||| ||||||||||||||||||    
T  45753220 tctctctattgctttggtgtttgtgcctacctaattttttttgtataatttggttgt 45753276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 50314693 - 50314729
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  50314693 tgtttttactttctctctctattactttgatttttgt 50314729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 50559228 - 50559180
Alignment:
Q  217 tcatacttgcatagtgtttatactttctctctctattgctttgattttt 265  Q
    |||||||| |||  ||||| |||||||||||||||||| ||||||||||    
T  50559228 tcatacttacattatgtttttactttctctctctattgttttgattttt 50559180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 54099353 - 54099325
Alignment:
Q  237 tactttctctctctattgctttgattttt 265  Q
    |||||||||||||||||||||||||||||    
T  54099353 tactttctctctctattgctttgattttt 54099325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 44061792 - 44061897
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaat 333  Q
    |||||||||| ||| |||||||||||||||| ||  ||  |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  44061792 tactttctctttctgttgctttgatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaaattatcacaagaaatagttgttcaaat 44061891  T
Q  334 aacatt 339  Q
    ||||||    
T  44061892 aacatt 44061897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 15716972 - 15716867
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||||||||||||||||||||| ||||| ||  ||| |||||||||||||||||| |||||||||||||| || ||| | |||||  ||||||||||    
T  15716972 tactttctctctctattgctttgatatttgtatcactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaaaagttgttcaaat 15716873  T
Q  334 aacatt 339  Q
    ||||||    
T  15716872 aacatt 15716867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 12241154 - 12241252
Alignment:
Q  244 tctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaataacatt 339  Q
    |||||||||||||||||||||| | ||  ||  |||||||||||||||||| ||||||||||||||||||||| | |||||  ||||||||||||||||    
T  12241154 tctctctattgctttgatttttatgtcactatctaaatttctttgtataatgtggttgtccaacaaattatcacataaaaaagttgttcaaataacatt 12241252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 37172138 - 37172240
Alignment:
Q  240 tttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaataac 336  Q
    ||||||| || ||| ||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||| | | || |||| ||||||||||||||    
T  37172138 tttctctttccattactttgatttttgtgtcattacctaaatttctttgtataatttggttgtccaacaaattgttacaagaaaaaattgttcaaataac 37172237  T
Q  337 att 339  Q
    |||    
T  37172238 att 37172240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 1068681 - 1068786
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||||||||||||||||||||| |||||  |  ||| |||||||||||||||||| |||||||||||||| || ||| | |||||  ||||||||||    
T  1068681 tactttctctctctattgctttgatatttgtaacactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaaaggttgttcaaat 1068780  T
Q  334 aacatt 339  Q
    ||||||    
T  1068781 aacatt 1068786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 33107863 - 33107758
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    |||||||||||||| |||||||||| |||||    |||| |||||||||||||||||| ||||||||||||||||| ||| | |||||  ||||||||||    
T  33107863 tactttctctctctgttgctttgatatttgtgcaactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaaaggttgttcaaat 33107764  T
Q  334 aacatt 339  Q
    ||||||    
T  33107763 aacatt 33107758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 44090961 - 44091030
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaa 304  Q
    ||||||||||||||||||||||||||||||| |  |||| |||||||||||||||||| |||||||||||    
T  44090961 tactttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaa 44091030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 9630167 - 9630303
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtcca 303  Q
    |||||||| ||||||||||  || ||  || || ||||| |||||||| ||||||||||| | ||  ||| ||||||||||| |||||||| |||||| |    
T  9630167 aactttctctttcatacttatattgtccttctattttctttctctatttctttgatttttatatcactacctaaatttctttatataatttagttgtcta 9630266  T
Q  304 acaaattatcataaaaaata-ttgttcaaataacatt 339  Q
    ||||||| ||| |||||||| ||||| ||||||||||    
T  9630267 acaaattgtcacaaaaaatagttgtttaaataacatt 9630303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 5600983 - 5600904
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttctactt--aaatttctttgtataatttggttgtccaacaaattatca 314  Q
    |||||||||||| |||||||||||||||||| ||  | |  ||||||||||||| |||||||||||||||||| ||||||    
T  5600983 tactttctctctttattgctttgatttttgtgtcaccatctaaatttctttgtaaaatttggttgtccaacaagttatca 5600904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 5639637 - 5639716
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttctactt--aaatttctttgtataatttggttgtccaacaaattatca 314  Q
    |||||||||||| |||||||||||||||||| ||  | |  ||||||||||||| |||||||||||||||||| ||||||    
T  5639637 tactttctctctttattgctttgatttttgtgtcaccatctaaatttctttgtaaaatttggttgtccaacaagttatca 5639716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 45405980 - 45405893
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat 322  Q
    |||||||||||||||||| |||||||||||| |   ||  ||||||| ||||||||||||||||||||||||| || |||||| ||||    
T  45405980 tactttctctctctattgttttgatttttgtgttattatataaatttatttgtataatttggttgtccaacaagttctcataagaaat 45405893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 26026974 - 26027076
Alignment:
Q  240 tttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaataac 336  Q
    ||||||| ||||||||||| |||||||| ||  ||  ||||||||||||||||||||||||| ||||||| || ||| || |||||  ||||||||||||    
T  26026974 tttctctttctattgctttaatttttgtatcactatctaaatttctttgtataatttggttggccaacaagttgtcacaagaaatagctgttcaaataac 26027073  T
Q  337 att 339  Q
    |||    
T  26027074 att 26027076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 25987783 - 25987718
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgt 300  Q
    |||||| |||||||||||||||||||||||| |  |||| |||||||||||||||||||| |||||    
T  25987783 tactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttagttgt 25987718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 34435733 - 34435628
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||| ||||||||||||||||| |||||  |  ||| |||||||||||||||||| ||||||| |||||| || ||| | |||||  ||||||||||    
T  34435733 tactttcgctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtgcaacaagttgtcacataaaaaggttgttcaaat 34435634  T
Q  334 aacatt 339  Q
    ||||||    
T  34435633 aacatt 34435628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 9629679 - 9629743
Alignment:
Q  276 aaatttctttgtataatttggttgtccaacaaattatcat-aaaaaatattgttcaaataacatt 339  Q
    |||||||||||||||||||||||||||||||| || |||| | ||||  ||||||||||||||||    
T  9629679 aaatttctttgtataatttggttgtccaacaagttgtcatgagaaaaagttgttcaaataacatt 9629743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 44825517 - 44825583
Alignment:
Q  237 tactttctctctctattgctttgatttttg--tttctacttaaatttctttgtataatttggttgtc 301  Q
    ||||||||||||||||||||||||||||||  | | ||  ||||||||||||||||||||| |||||    
T  44825517 tactttctctctctattgctttgatttttgtatatttatctaaatttctttgtataatttgattgtc 44825583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 33451560 - 33451456
Alignment:
Q  237 tactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    |||||||||||||||||||||||||||||||    |||| | ||||||||||||||||||| ||||| ||||| || ||| || |||   ||||||||||    
T  33451560 tactttctctctctattgctttgatttttgtgccactacct-aatttctttgtataatttgattgtctaacaagttgtcacaagaaagggttgttcaaat 33451462  T
Q  334 aacatt 339  Q
    ||||||    
T  33451461 aacatt 33451456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 10902773 - 10902809
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||||||||||||||||||||||||||||    
T  10902773 tgtttttactttctctctctattgctttgatttttgt 10902809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 343
Target Start/End: Original strand, 39211054 - 39211225
Alignment:
Q  179 agaaatgatatttcaacgaccatt----gataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--ta 272  Q
    ||||||||||||| ||| ||||||    || |||||||| | |||||||  |||  ||||| |||||| ||||||||||| |||| ||||||| ||  ||    
T  39211054 agaaatgatatttgaacaaccattttttgacaactttctctctcatactcacattttgtttttactttttctctctattgttttggtttttgtgtcaata 39211153  T
Q  273 cttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacattcctc 343  Q
    || | ||||||||||||| || | |||||  |||| || |||  |||||| ||||||||||||||| |||||    
T  39211154 ctcatatttctttgtatatttagattgtctcacaagttgtcaacaaaaatgattgttcaaataacactcctc 39211225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 10731620 - 10731650
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  10731620 tactttctctctctattgctttgatttttgt 10731650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 32020498 - 32020433
Alignment:
Q  201 ttgataactttctatttcatacttgcatagtgtttatactttctctct--ctattgctttgatttt 264  Q
    ||||||||||||| | ||||||| ||||  ||||| ||||||||||||  ||||||||||||||||    
T  32020498 ttgataactttctctctcatactcgcattatgtttttactttctctctcgctattgctttgatttt 32020433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 6445220 - 6445281
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||| ||| |||||  |||| ||||| |||||| ||||||||||| ||||||||||||    
T  6445220 aactttctcttttatactcacataatgtttttactttatctctctattgttttgatttttgt 6445281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 28772117 - 28772053
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaa 304  Q
    ||||||| ||||| ||||||||||||  |  ||| |||||||||||||||||||| |||||||||    
T  28772117 tctctctttattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaa 28772053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 10592283 - 10592247
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  10592283 tgtttttactttctctctctattgctttggtttttgt 10592247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 10839499 - 10839376
Alignment:
Q  217 tcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataa-tttggttgtccaacaaattatc 313  Q
    |||||||| |||  ||||| |||||||||| |||||||||||| |||||||  |  || |||| |||||||||| || ||| ||||||  | ||||||||    
T  10839499 tcatacttacattatgtttttactttctctatctattgctttggtttttgtgccaatatttaattttctttgtaaaattttagttgtctcaaaaattatc 10839400  T
Q  314 ataaaaaatattgttcaaataaca 337  Q
    |||||||    |||||||||||||    
T  10839399 ataaaaatggatgttcaaataaca 10839376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 37133865 - 37133829
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  37133865 tgtttttactttctctttctattgctttgatttttgt 37133829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 37316811 - 37316706
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||||||||||||||||||||| ||||| ||  ||| |||||||||||||||||| |||||||||||||| || ||||| |||||  ||||||||||    
T  37316811 tactttctctctctattgctttgatatttgtgtcactacctaaatttctttgtataatgtggttgtccaacaagttgtcatagaaaaaggttgttcaaat 37316712  T
Q  334 aacatt 339  Q
    ||||||    
T  37316711 aacatt 37316706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 31578509 - 31578614
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||| |||||||||||||||||||||||| |  |||| ||||||||||||||||| || |||||||||||| || ||| || |||| |||||||||||    
T  31578509 tactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaagttgtcacaagaaatgattgttcaaat 31578608  T
Q  334 aacatt 339  Q
    | ||||    
T  31578609 atcatt 31578614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 44239118 - 44239216
Alignment:
Q  244 tctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacatt 339  Q
    |||||||||||||||||||||||| ||  | | |||||||||||||||||||| ||||||||| ||||| ||| || ||||  ||||||||||||||||    
T  44239118 tctctctattgctttgatttttgtgtcactgcctaaatttctttgtataatttagttgtccaaaaaattgtcacaataaatggttgttcaaataacatt 44239216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 11965868 - 11965973
Alignment:
Q  237 tactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    |||||||||||||||||||||||||||||||    |||  ||||||||| |||||||| |||||||||||||| || ||| | |||||  ||||||||||    
T  11965868 tactttctctctctattgctttgatttttgtgccactatctaaatttctatgtataatgtggttgtccaacaagttgtcacataaaaaggttgttcaaat 11965967  T
Q  334 aacatt 339  Q
    ||||||    
T  11965968 aacatt 11965973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 43057148 - 43057227
Alignment:
Q  246 tctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata 323  Q
    |||||||||||||||||||||| ||  ||||||||||| ||| |||||||| ||||||||| | ||||||| ||||||||    
T  43057148 tctctattgctttgatttttgtgtcactacttaaatttatttatataatttagttgtccaaaagattatcacaaaaaata 43057227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 18510750 - 18510855
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    ||||||||||||||| | ||||||||||||| ||  ||| ||||||||||||||| ||||||||||| || |  || ||| || ||||| ||||||||||    
T  18510750 tactttctctctctacttctttgatttttgtgtcattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaat 18510849  T
Q  334 aacatt 339  Q
    ||||||    
T  18510850 aacatt 18510855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 37731196 - 37731091
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||| ||||||||||||||||| |||||  |  ||| |||||||||||||||||| ||||||| |||||| || ||| | |||||  ||||||||||    
T  37731196 tactttcgctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtgcaacaagttgtcacataaaaaggttgttcaaat 37731097  T
Q  334 aacatt 339  Q
    ||||||    
T  37731096 aacatt 37731091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 2427951 - 2427890
Alignment:
Q  279 tttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacatt 339  Q
    |||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||||||||||    
T  2427951 tttctttgtataatttagttgtccaacaaattgtcacaaaaaatggttgttcaaataacatt 2427890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 8847562 - 8847668
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattat--cataaaaaatattgttcaaa 332  Q
    ||||||||||||||||||||||||| ||| |  |  ||  ||||||||||||||||||  ||||||||||||| || |  |||| |||| ||||||||||    
T  8847562 tactttctctctctattgctttgatatttataccactatctaaatttctttgtataatgcggttgtccaacaagttgtcacatagaaaagattgttcaaa 8847661  T
Q  333 taacatt 339  Q
    |||||||    
T  8847662 taacatt 8847668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 350
Target Start/End: Original strand, 14871951 - 14872062
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacat 338  Q
    ||||||||||||| ||||||||||||  |  ||| ||||||||||||||||||||| ||||| ||||| || | | || ||||  |||||||||||||||    
T  14871951 tctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttgattgtctaacaagttgttacaagaaatggttgttcaaataacat 14872050  T
Q  339 tcctcgtttaat 350  Q
    | ||| ||||||    
T  14872051 ttctcttttaat 14872062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 240 - 343
Target Start/End: Complemental strand, 6511550 - 6511444
Alignment:
Q  240 tttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataac 336  Q
    |||||||||||||||||||| ||||||| ||   ||| | |||||||| |||| ||||||||||| |||| || || || |||||  |||||||||||||    
T  6511550 tttctctctctattgctttggtttttgtgtcaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataac 6511451  T
Q  337 attcctc 343  Q
    |||||||    
T  6511450 attcctc 6511444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 40443135 - 40443233
Alignment:
Q  248 tctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacattcctc 343  Q
    |||||||||||| ||||||| ||  |||| | |||||||| |||| ||||||||||| |||| ||||||  ||||||  |||||||||||||| |||||    
T  40443135 tctattgctttggtttttgtgtcgatactaacatttctttatatattttggttgtcccacaagttatcaacaaaaatggttgttcaaataacactcctc 40443233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 40504314 - 40504404
Alignment:
Q  250 tattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataaca 337  Q
    |||||||||||||||||| ||  |||| | |||||||| |||| ||||||||||| |||| ||||||  ||||||  ||||||||||||||    
T  40504314 tattgctttgatttttgtgtcaatactaacatttctttatatattttggttgtcccacaagttatcaacaaaaatggttgttcaaataaca 40504404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 1079106 - 1079053
Alignment:
Q  250 tattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtc 301  Q
    |||||||||||||||||| ||  | |||||||||||||||||||||| ||||||    
T  1079106 tattgctttgatttttgtgtcactgcttaaatttctttgtataatttagttgtc 1079053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 32944500 - 32944431
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaa 304  Q
    |||||| |||||||||||||||||||||||| |  |||| ||||||| ||| ||||||||  ||||||||    
T  32944500 tactttttctctctattgctttgatttttgtgtcactacctaaatttttttatataatttaattgtccaa 32944431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 34945087 - 34945057
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  34945087 tactttctctctctattgctttgatttttgt 34945057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 14877099 - 14877180
Alignment:
Q  270 ctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacattcctcgtttaat 350  Q
    |||| |||||||||||||  |||||||||||| ||||| || ||| || ||||  |||||||||||||||| ||| ||||||    
T  14877099 ctacctaaatttctttgttaaatttggttgtctaacaagttgtcacaagaaatggttgttcaaataacatttctcttttaat 14877180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 19109125 - 19109060
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||| ||||| | |||||||| |||  | ||| || ||||||||||||||||||||||||||||    
T  19109125 tgataaatttctctctcatacttacattatctttttattttctctctctattgctttgatttttgt 19109060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 19642673 - 19642702
Alignment:
Q  238 actttctctctctattgctttgatttttgt 267  Q
    ||||||||||||||||||||||||||||||    
T  19642673 actttctctctctattgctttgatttttgt 19642702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 22416252 - 22416317
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||||| |  ||||||| |||  | ||| ||||||||||||||||||||||| |||||||    
T  22416252 tgataactttctctcccatacttacattatctttttactttctctctctattgctttggtttttgt 22416317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 1907766 - 1907730
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  1907766 tgtttttactttctctctctattgttttgatttttgt 1907730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 7258558 - 7258530
Alignment:
Q  237 tactttctctctctattgctttgattttt 265  Q
    |||||||||||||||||||||||||||||    
T  7258558 tactttctctctctattgctttgattttt 7258530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 14871715 - 14871743
Alignment:
Q  239 ctttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||    
T  14871715 ctttctctctctattgctttgatttttgt 14871743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 18846679 - 18846715
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  18846679 tgtttttactttctctctctattactttgatttttgt 18846715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 19843561 - 19843589
Alignment:
Q  239 ctttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||    
T  19843561 ctttctctctctattgctttgatttttgt 19843589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 19916730 - 19916805
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaatt 310  Q
    |||||||||||||||||  |||||| ||||| ||  | | |||||||||||||||||| | ||| |||||||||||    
T  19916730 tactttctctctctattattttgatatttgtgtcactgcctaaatttctttgtataatgtagttatccaacaaatt 19916805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 27490733 - 27490697
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| || ||||||||||||||||||||||||||||    
T  27490733 tgtttttaatttctctctctattgctttgatttttgt 27490697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 31548377 - 31548448
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgt 300  Q
    ||||| |||||||||||||||||||||||  |||||| ||  |||| | ||||||||||||| || ||||||    
T  31548377 tgtttttactttctctctctattgctttggattttgtatcaatactcatatttctttgtatatttaggttgt 31548448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 44977502 - 44977466
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  44977502 tgtttttactttctctctctattgctttggtttttgt 44977466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 4857985 - 4858087
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||||||||||||||||||||| |||||  |  |||||||||||||||||||||| ||||||||||| ||||||||| | |||||  ||||||||||    
T  4857985 tactttctctctctattgctttgatatttgtgccactacttaaatttctttgtataatgtggttgtccaataaattatcacataaaaaggttgttcaaat 4858084  T
Q  334 aac 336  Q
    |||    
T  4858085 aac 4858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 40439836 - 40439731
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||||||||||||||||||||| |||||  |  ||| |||||||||||||||||| ||||||||||||||||| ||| | |||||  ||||||||||    
T  40439836 tactttctctctctattgctttgatatttgtgacactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaaaggttgttcaaat 40439737  T
Q  334 aacatt 339  Q
    ||||||    
T  40439736 aacatt 40439731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 47642603 - 47642498
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||||||| ||||||||||| |||||||| ||  ||  ||||||||||||||||||||||||||||||||| || ||  |||||||  ||||||||||    
T  47642603 tactttctctttctattgctttaatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaagttgtcccaaaaaatggttgttcaaat 47642504  T
Q  334 aacatt 339  Q
    ||||||    
T  47642503 aacatt 47642498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 23332352 - 23332423
Alignment:
Q  245 ctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatca 314  Q
    ||||||||||||||||| ||||| |  |||| |||||||||||||||||| |||||||||||||||||||||    
T  23332352 ctctctattgctttgatatttgtgttactacctaaatttctttgtataatgtggttgtccaacaaattatca 23332423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 38878897 - 38878783
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    |||||| ||| |||||||||||||||||||| |  |||| ||||||||||| |||||| | |||||||||||| || ||| | |||||| ||||||||||    
T  38878897 tactttttctttctattgctttgatttttgtgtcactacctaaatttctttatataatatagttgtccaacaagttgtcacataaaaatgttgttcaaat 38878798  T
Q  334 aacattcctcgttta 348  Q
    |||||| ||| ||||    
T  38878797 aacattgctcattta 38878783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 45008122 - 45008051
Alignment:
Q  273 cttaaatttctttgtataatttggttgtccaacaaattatcataaaaaa-tattgttcaaataacattcctc 343  Q
    |||| ||||||||||||| |||| ||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  45008122 cttacatttctttgtatattttgattgtccaacaaattatcttaaaaaattgttgttcaaataacattcctc 45008051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 7919058 - 7918953
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    |||||| |||||||||| |||||||||||||  |  ||| ||||||||||||||||||||||||||| ||||| || ||| || |||   ||||||||||    
T  7919058 tactttatctctctattactttgatttttgtgccactacctaaatttctttgtataatttggttgtctaacaagttgtcacaagaaagggttgttcaaat 7918959  T
Q  334 aacatt 339  Q
    ||||||    
T  7918958 aacatt 7918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 48858898 - 48858967
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaa 304  Q
    ||||| ||||||||||||||||||||||||| |  |||  |||||||||||||||||||| |||||||||    
T  48858898 tacttcctctctctattgctttgatttttgtgtcactatctaaatttctttgtataatttagttgtccaa 48858967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 35369743 - 35369804
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||| |||||||  ||| || ||| |||||||||||||||||||||||||||||||    
T  35369743 aactttctatctcatactcacattgtctttttactttctctctctattgctttgatttttgt 35369804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 48983664 - 48983592
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaa 307  Q
    |||||||||| ||||||||||||||||||||  |  ||  |||||||||||||| ||||||||||||||||||    
T  48983664 tactttctctttctattgctttgatttttgtgccattatctaaatttctttgtaaaatttggttgtccaacaa 48983592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 17082736 - 17082667
Alignment:
Q  240 tttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaa 307  Q
    |||||||||||||| ||||||| |||||  |  ||| |||||||||||||||||| ||||||||||||||    
T  17082736 tttctctctctattactttgatatttgtgccactacctaaatttctttgtataatatggttgtccaacaa 17082667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 42468667 - 42468772
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaat 333  Q
    |||||| ||||| ||||| ||| |||||||| ||  ||| ||||||||||||||||| || ||||||||||||||| ||| || ||||  ||||||||||    
T  42468667 tactttatctctttattgttttaatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaaattgtcacaagaaatggttgttcaaat 42468766  T
Q  334 aacatt 339  Q
    | ||||    
T  42468767 atcatt 42468772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 9987995 - 9988056
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||| |||||||||  |||  | ||| |||||||||||||||||||||||||||||||    
T  9987995 aactttctctttcatactcacattatatttttactttctctctctattgctttgatttttgt 9988056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 27742697 - 27742789
Alignment:
Q  244 tctctctattgctttgatttttgtttctacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaataacatt 339  Q
    |||||||||||||||||||||||    ||| |||||||||||||||| | | |||||||||||| || | | | |||||  ||||||||||||||||    
T  27742697 tctctctattgctttgatttttg----tacctaaatttctttgtatagtgttgttgtccaacaagttgttacataaaaaggttgttcaaataacatt 27742789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 41070890 - 41070952
Alignment:
Q  230 gtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtata 290  Q
    |||||| |||||||||| |||||||||||||||||| | ||  ||| ||||||||||||||||    
T  41070890 gtgtttttactttctctatctattgctttgatttttatgtcaatacctaaatttctttgtata 41070952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 44519148 - 44519118
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  44519148 tactttctctctctattgctttgatttttgt 44519118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 37275065 - 37275000
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||||| |||||||||  |||  | ||| |||||||| |||||||||||||| |||||||    
T  37275065 tgataactttctctttcatactcacattatctttttactttctttctctattgctttggtttttgt 37275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 48261208 - 48261244
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  48261208 tgtttttactttctctctctattgctttggtttttgt 48261244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 49065367 - 49065331
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  49065367 tgtttttactttctctctctattgctttggtttttgt 49065331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 32777703 - 32777598
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    ||||||||||||| ||| |||||||||||||  |  ||| ||||||||||||||||||||||||||||||||| |||| | || |||| |||||||||||    
T  32777703 tactttctctctccattactttgatttttgtgccactacctaaatttctttgtataatttggttgtccaacaagttattacaagaaaagattgttcaaat 32777604  T
Q  334 aacatt 339  Q
    ||||||    
T  32777603 aacatt 32777598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 43081886 - 43081781
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    |||||||||||||||||||||| || ||||| ||  ||| |||||||||||||||||| |||||||| |||||||| ||| | |||||| ||||||||||    
T  43081886 tactttctctctctattgctttaatatttgtgtcactacctaaatttctttgtataatgtggttgtctaacaaattgtcacataaaaatgttgttcaaat 43081787  T
Q  334 aacatt 339  Q
    ||||||    
T  43081786 aacatt 43081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 12007182 - 12007077
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaat 333  Q
    |||||||||||||||||||||||||||||||  |  ||  |||||||||||||| |||||||||||||||||| || ||| || ||||| |||| |||||    
T  12007182 tactttctctctctattgctttgatttttgtgccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatagttgtacaaat 12007083  T
Q  334 aacatt 339  Q
    ||||||    
T  12007082 aacatt 12007077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 43807809 - 43807706
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    |||||||||| ||||||  |||||||||||| ||  ||||||||| |||||||||||||||||||| ||||||||| |||||| |||   ||||||||||    
T  43807809 tactttctctttctattaatttgatttttgtgtcactacttaaatgtctttgtataatttggttgtacaacaaattgtcataagaaagggttgttcaaat 43807710  T
Q  334 aaca 337  Q
    ||||    
T  43807709 aaca 43807706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 28249559 - 28249461
Alignment:
Q  244 tctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacatt 339  Q
    ||||||| |||||||||||||||| ||  |||||||||||||||||||||||| ||||||||| || || ||| || ||||  ||||||||||||||||    
T  28249559 tctctcttttgctttgatttttgtgtcactacttaaatttctttgtataatttagttgtccaaaaagttgtcacaagaaatggttgttcaaataacatt 28249461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 242 - 357
Target Start/End: Complemental strand, 29723916 - 29723798
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacat 338  Q
    ||||||||||||||||||||||||||  |  ||  |||||||||||||| |||||||||||||||||| || ||| || ||||  |||| ||||||||||    
T  29723916 tctctctctattgctttgatttttgtaccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaataacat 29723817  T
Q  339 tcctcgtttaatttttgtt 357  Q
    | ||| ||| |||||||||    
T  29723816 tgctcatttcatttttgtt 29723798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 33057454 - 33057559
Alignment:
Q  237 tactttctctctctattgctttgatttt--tgtttctacttaaatttctttgtataatttggttgtccaacaaattatcataa-aaaatattgttcaaat 333  Q
    ||||||||||||||||||||||||||||  ||||  ||| ||||||||||||||| ||||||||||| || |  || ||| || |||| |||||||||||    
T  33057454 tactttctctctctattgctttgatttttgtgttattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaagattgttcaaat 33057553  T
Q  334 aacatt 339  Q
    ||||||    
T  33057554 aacatt 33057559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 33845117 - 33845222
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    |||||| | ||||| |||||||||||||||| ||  ||| |||||||||||||||||| ||||||||||||||||| ||| |  ||||  ||||||||||    
T  33845117 tactttttttctctgttgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaacaaattgtcacatgaaaaggttgttcaaat 33845216  T
Q  334 aacatt 339  Q
    ||||||    
T  33845217 aacatt 33845222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 2008823 - 2008723
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacat 338  Q
    |||||||||||||||||||| |||||  |  ||| |||||||||||||||||| |||||||||||||| || ||| | |||||  |||||||||||||||    
T  2008823 tctctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaatggttgttcaaataacat 2008724  T
Q  339 t 339  Q
    |    
T  2008723 t 2008723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 37352185 - 37352257
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaa 307  Q
    ||||||||||||||| || |||||||||||| ||  ||| ||||||| |||||||||||||||||||||||||    
T  37352185 tactttctctctctactgttttgatttttgtgtcactacctaaatttatttgtataatttggttgtccaacaa 37352257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 15325636 - 15325531
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    |||||||||||||||||| ||| |||||||| ||  ||  ||||||| |||||||||| |||||||||||||| || ||| | |||||  ||||||||||    
T  15325636 tactttctctctctattgtttttatttttgtgtcactatctaaatttttttgtataatgtggttgtccaacaagttgtcacataaaaaggttgttcaaat 15325537  T
Q  334 aacatt 339  Q
    ||||||    
T  15325536 aacatt 15325531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 26749075 - 26749184
Alignment:
Q  233 tttatactttctctctctattgctttgatttttgtttct--acttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttc 329  Q
    |||||||||||| ||||||||||||||||| ||||  |   || ||||| |||||||||||||| ||||||||| | ||| ||| |||||||  ||||||    
T  26749075 tttatactttctttctctattgctttgattgttgtgccataacctaaatctctttgtataatttagttgtccaaaagattgtcacaaaaaatggttgttc 26749174  T
Q  330 aaataacatt 339  Q
    ||||||||||    
T  26749175 aaataacatt 26749184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 34978371 - 34978440
Alignment:
Q  237 tactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaa 304  Q
    ||||||||||||||||||||||| |||||||    |||| |||||||||||||||||||| |||||||||    
T  34978371 tactttctctctctattgctttgttttttgtgccactacctaaatttctttgtataatttagttgtccaa 34978440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 45420057 - 45419988
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaa 304  Q
    |||||||||||||||||| ||||||||||||  |  ||| |||||||||||||||||||| |||||||||    
T  45420057 tactttctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaa 45419988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 13152667 - 13152737
Alignment:
Q  237 tactttctctctctattgcttt-gatttttgtttc--tacttaaatttctttgtataatttggttgtccaa 304  Q
    |||||||||||||||||||||| |||||||||  |  ||| |||||||||||||||||||| |||||||||    
T  13152667 tactttctctctctattgcttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaa 13152737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 10578185 - 10578251
Alignment:
Q  278 atttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaataacattcctc 343  Q
    |||||||| |||| ||||||||||| |||||||||| || |||||| |||||||||||||| |||||    
T  10578185 atttctttctatattttggttgtcccacaaattatcctacaaaatagttgttcaaataacactcctc 10578251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 21103056 - 21103192
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtcca 303  Q
    |||||||||| | |||||| |||  | ||| |||||| ||||| |||||||||||||||| |  |  ||  ||||||||||||||||| || ||||||||    
T  21103056 aactttctatcttatacttacattatttttttactttatctctttattgctttgatttttatgccactatctaaatttctttgtataagttagttgtcca 21103155  T
Q  304 acaaattatcataaaaaat-attgttcaaataacatt 339  Q
    |||| |||||| || ||||  ||||||||||| ||||    
T  21103156 acaagttatcacaagaaatggttgttcaaatatcatt 21103192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 31445361 - 31445422
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||| |||||||||  |||  | ||| |||||||||||||||||||||||||||||||    
T  31445361 aactttctttttcatactcacattatatttttactttctctctctattgctttgatttttgt 31445422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 4292496 - 4292532
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||||||||||||||||||||||||||||    
T  4292496 tgtttttactttctctctctattgctttgatttttgt 4292532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 343
Target Start/End: Complemental strand, 31711930 - 31711824
Alignment:
Q  240 tttctctctctattgctttgatttttgtttcta--cttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataac 336  Q
    ||||||||||||||| |||| |||||||  | |  || | |||||||| |||| ||||||||||| |||||||||| || |||||  |||||||||||||    
T  31711930 tttctctctctattgttttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaaattatcctacaaaatggttgttcaaataac 31711831  T
Q  337 attcctc 343  Q
    | |||||    
T  31711830 actcctc 31711824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 47448870 - 47448956
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtata 290  Q
    |||||||| | |||||||  ||| |||||| |||||||| |||||||||||||| |||||||    |||| ||||||||||||||||    
T  47448870 aactttctctctcatactcacattgtgtttttactttctttctctattgctttggtttttgtgccactacctaaatttctttgtata 47448956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 1284455 - 1284518
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||||| |||||||||| |||  ||||| |||||  ||||||||||||||| ||||||||    
T  1284455 tgataactttctttttcatacttacattatgtttttactt--tctctctattgctttaatttttgt 1284518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 10700182 - 10700152
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  10700182 tactttctctctctattgctttgatttttgt 10700152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 35822971 - 35822941
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  35822971 tactttctctctctattgctttgatttttgt 35822941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 40854651 - 40854621
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  40854651 tactttctctctctattgctttgatttttgt 40854621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 18505813 - 18505878
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||| ||||| |||||||||  |||  ||||| || ||||||||||||||| ||||||||||||    
T  18505813 tgataagtttctttttcatactcacattatgtttttagtttctctctctattgttttgatttttgt 18505878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 32453533 - 32453598
Alignment:
Q  202 tgataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||| ||||| ||| |||||  ||| |||||| |||||||||| ||||||| ||||||||||||    
T  32453533 tgataattttctctttgatactaacattgtgtttttactttctctttctattgttttgatttttgt 32453598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 35098731 - 35098670
Alignment:
Q  206 aactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||| |||||||||  |||  | ||| |||||||||| ||||||||||||||||||||    
T  35098731 aactttctctttcatactcacattctatttttactttctctttctattgctttgatttttgt 35098670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 24532945 - 24532909
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  24532945 tgtttttactttctctctctattgctttggtttttgt 24532909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 8949 - 8880
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaa 304  Q
    ||||||||||||||||||||||||||||||| |  |||| |||||||||||||||||| |||||||||||    
T  8949 tactttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaa 8880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 18065086 - 18064981
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    ||||||||||||||||||||||||| |||||  |  ||| |||||||||||||||||| |||||||||||||| || ||| | |||||  ||||||||||    
T  18065086 tactttctctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaaaagttgttcaaat 18064987  T
Q  334 aacatt 339  Q
    ||||||    
T  18064986 aacatt 18064981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 14910258 - 14910352
Alignment:
Q  244 tctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaatattgttcaaataac 336  Q
    |||||||||||||||||||||||| ||  ||| |||||||||||||||||||| ||||||||| |  || ||| || |||| |||||||||||||    
T  14910258 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttagttgtccaaaaggttctcaaaagaaatgttgttcaaataac 14910352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 8505770 - 8505664
Alignment:
Q  237 tactttctctctctattgctttgatttttgt--ttctacttaaatttctttgtataattt-ggttgtccaacaaattatcataaaaaat-attgttcaaa 332  Q
    |||||| ||||||||||||||||||||||||    |||| ||||||||||||||||||||  ||||||||| ||||| ||| || |||| ||||||||||    
T  8505770 tactttttctctctattgctttgatttttgtacaactacctaaatttctttgtataatttaagttgtccaaaaaattgtcacaagaaatgattgttcaaa 8505671  T
Q  333 taacatt 339  Q
    || ||||    
T  8505670 tatcatt 8505664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 8645383 - 8645452
Alignment:
Q  237 tactttctctctctattgctttgattttt--gtttctacttaaatttctttgtataatttggttgtccaa 304  Q
    ||||||||||||||||||||||||||| |  ||  |||| |||||||||||||||||||| |||||||||    
T  8645383 tactttctctctctattgctttgatttatgcgtcactacctaaatttctttgtataatttagttgtccaa 8645452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 33712395 - 33712500
Alignment:
Q  237 tactttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcata-aaaaatattgttcaaat 333  Q
    |||||||||||||| |||||||||| |||||    |||| |||||||||||||||||| |||||||||||||| || | | | |||||  ||||||||||    
T  33712395 tactttctctctctgttgctttgatatttgtgcaactacctaaatttctttgtataatgtggttgtccaacaagttgttacataaaaaggttgttcaaat 33712494  T
Q  334 aacatt 339  Q
    ||||||    
T  33712495 aacatt 33712500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 5739757 - 5739655
Alignment:
Q  240 tttctctctctattgctttgatttttgttt--ctacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataac 336  Q
    ||||||| |||||||||||||||||||| |  |||| ||| ||||||| | ||||||| ||||||||||| || |||||| ||||   ||||||||||||    
T  5739757 tttctctttctattgctttgatttttgtgtcactacctaattttctttatttaatttgattgtccaacaagttgtcataagaaatggatgttcaaataac 5739658  T
Q  337 att 339  Q
    |||    
T  5739657 att 5739655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 22079566 - 22079530
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| |||||||||||||||||||||||||||||||    
T  22079566 tgtttttactttctctctctattgctttgatttttgt 22079530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 21468001 - 21467934
Alignment:
Q  273 cttaaatttctttgtataatttggttgtccaacaaattatcataaaaaat-attgttcaaataacatt 339  Q
    |||| ||||||||||||| ||||||||||||| |||||||  |||||| | ||| |||||||||||||    
T  21468001 cttacatttctttgtatattttggttgtccaataaattattttaaaaagtgattattcaaataacatt 21467934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 12588367 - 12588264
Alignment:
Q  242 tctctctctattgctttgatttttgt--ttctacttaaatttctttgtataatttggttgtccaacaaattatc---ataaaaaatattgttcaaataac 336  Q
    ||||||||||||||||||||||||||    |||| || ||||||||||| | |||  |||||||| ||||||||   | ||||||  |||||||||||||    
T  12588367 tctctctctattgctttgatttttgtgccactacatatatttctttgtaaattttaattgtccaaaaaattatcccaaaaaaaaaagttgttcaaataac 12588268  T
Q  337 attc 340  Q
    ||||    
T  12588267 attc 12588264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 31883300 - 31883270
Alignment:
Q  237 tactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||||||||||||||||||    
T  31883300 tactttctctctctattgctttgatttttgt 31883270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 3853303 - 3853274
Alignment:
Q  238 actttctctctctattgctttgatttttgt 267  Q
    ||||||||||||||||||||||||||||||    
T  3853303 actttctctctctattgctttgatttttgt 3853274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 267
Target Start/End: Complemental strand, 18737628 - 18737534
Alignment:
Q  176 ttgagaaatgatatttcaacgaccattg---ataactttctatttcatacttgcatagtgtttatactttctctctctattgctttgatttttgt 267  Q
    |||||||||||||||| ||| ||||||    |||||||| | | ||||||||||||  | ||| |||||||||||| ||||| |||| |||||||    
T  18737628 ttgagaaatgatatttgaacaaccattttttataactttttctctcatacttgcattatctttttactttctctctttattgttttggtttttgt 18737534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 26595417 - 26595453
Alignment:
Q  231 tgtttatactttctctctctattgctttgatttttgt 267  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  26595417 tgtttttactttctctctctattgctttggtttttgt 26595453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 8547 - 8652
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttctact--taaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaat 333  Q
    |||||||||| |||||||||||||||||||| ||  |   ||||||||||| |||||||| |||||| ||||| || ||| || ||||| ||||||||||    
T  8547 tactttctctttctattgctttgatttttgtgtcaccaactaaatttctttatataatttagttgtctaacaagttgtcacaagaaatagttgttcaaat 8646  T
Q  334 aacatt 339  Q
    ||||||    
T  8647 aacatt 8652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 101891 - 101830
Alignment:
Q  242 tctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtc 301  Q
    |||||||||||||||||||||||| | ||  ||| |||||||||||||||||||||||||||    
T  101891 tctctctctattgctttgatttttatgtcactacctaaatttctttgtataatttggttgtc 101830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 22656 - 22725
Alignment:
Q  240 tttctctctctattgctttgatttttgtttct--acttaaatttctttgtataatttggttgtccaacaa 307  Q
    |||||||||| |||||||||||||||||  ||  ||| | ||||||||||||| ||||||||||| ||||    
T  22656 tttctctctccattgctttgatttttgtgcctagactcacatttctttgtatattttggttgtcccacaa 22725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 8914 - 8981
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtcc 302  Q
    |||||||||||||||||||| |||||||||| ||  |||| | ||||||||||||| |||||||||||    
T  8914 tactttctctctctattgctatgatttttgtgtcaatactcatatttctttgtatattttggttgtcc 8981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 13553 - 13448
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaat 333  Q
    |||||||||| |||||| ||| ||||||||| ||  | | |||||||||||||||||||| ||||||||| || || ||| |||||| | ||||| ||||    
T  13553 tactttctctttctattacttcgatttttgtatcactgcctaaatttctttgtataatttagttgtccaataagttgtcacaaaaaagagttgtttaaat 13454  T
Q  334 aacatt 339  Q
    ||||||    
T  13453 aacatt 13448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Original strand, 59291 - 59396
Alignment:
Q  237 tactttctctctctattgctttgatttttgtttc--tacttaaatttctttgtataatttggttgtccaacaaattatcataaaaaata-ttgttcaaat 333  Q
    |||||||||| |||||| ||| ||||||||| ||  | | |||||||||||||||||||| ||||||||| || || ||| |||||| | ||||| ||||    
T  59291 tactttctctttctattacttcgatttttgtatcactgcctaaatttctttgtataatttagttgtccaataagttgtcacaaaaaagagttgtttaaat 59390  T
Q  334 aacatt 339  Q
    ||||||    
T  59391 aacatt 59396  T

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