View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_low_15 (Length: 308)
Name: NF11129_low_15
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 4310159 - 4309880
Alignment:
| Q |
14 |
gaattaggggcagtcctcatgtcacatacttgttttgtagcattgagctagacccaatctaaattctaaaatgatattagagcatatccaattaaattat |
113 |
Q |
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| T |
4310159 |
gaattaggggcagtcctcatttcacatacttgttttgtagcattgagctagacccaatctaaattctaaaatgatattagagcatatccaattaaattat |
4310060 |
T |
|
| Q |
114 |
ccttctagatctgctgtgtaactagactagatattgcaatttggatagccttttggcaaacaatatcttactattggatagcctttttaccaatgaacct |
213 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4310059 |
ccttctagatatgctgtgtaactagactagatattgcaatttggatagccttttggcaaacaatatcttactattggatagcctttttaccaatgaacct |
4309960 |
T |
|
| Q |
214 |
tagcacaagagtacttatttagaataaaccaaaaatttaatccctaagttagtccttaaactataaaaaataacaagtat |
293 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4309959 |
tagtacaagagtatttatttagaataaaccaaaaatttaatccctaagttagtccttaaactataaaaaataacaagtat |
4309880 |
T |
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