View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_low_17 (Length: 249)
Name: NF11129_low_17
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_low_17 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 43583539 - 43583292
Alignment:
| Q |
2 |
gaggaggagcagagatatcagcgagggaatagcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaaga |
101 |
Q |
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| T |
43583539 |
gaggaggtggagagatatcagcgagggaatagcgaagaagatcggtgttagcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaaga |
43583440 |
T |
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| Q |
102 |
gatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttca |
201 |
Q |
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| T |
43583439 |
gatggctcctacacatccataaactggatccctaactcgtgcttcggcttcataagcaagggagttcacagcatcctccctttggtgagggagaagttca |
43583340 |
T |
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| Q |
202 |
ttgagaagctttgtgacattgctagcaccaaatattttgtgcacgttt |
249 |
Q |
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| T |
43583339 |
ttgagaagctttgtgacattgctagcaccaaatattttgtgcacgttt |
43583292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 34675520 - 34675303
Alignment:
| Q |
32 |
agcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatc |
131 |
Q |
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| T |
34675520 |
agcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatc |
34675421 |
T |
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| Q |
132 |
cctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcacca |
231 |
Q |
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| T |
34675420 |
tctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccg |
34675321 |
T |
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| Q |
232 |
aatattttgtgcacgttt |
249 |
Q |
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| T |
34675320 |
aagatcttgtgaacgttt |
34675303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 15262785 - 15262700
Alignment:
| Q |
148 |
gcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaa |
233 |
Q |
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| T |
15262785 |
gcttcataagcaagtgaattcacagcatcttcacgttggtgagggtgtaaatcattgagaagctttgtaacattgcttgctccaaa |
15262700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 12360614 - 12360795
Alignment:
| Q |
61 |
agttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaa |
160 |
Q |
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||||||||||| ||||| |||||||||||| || | || ||||| || || || |||||||||||||| | | | ||| || ||||| ||||||| |
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| T |
12360614 |
agttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatcttttatccttgcctcagcttcataagcaa |
12360713 |
T |
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| Q |
161 |
gggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtg |
242 |
Q |
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| T |
12360714 |
gagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttacttacattgcttgcaccaaatattttgtg |
12360795 |
T |
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