View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_low_2 (Length: 693)
Name: NF11129_low_2
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 29935642 - 29935308
Alignment:
| Q |
1 |
gcaaaaaagatgccaacaacaacgccgtcgtttcgagttactggggtatcagtaggcctaaggttcttaaggaagatggaactgagtggccatggaactg |
100 |
Q |
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| T |
29935642 |
gcaaaaaagatgccaaccacaacgccgtcgtttcgagttactggggtatcagtaggcctaaggttcttaaggaagatggaactgagtggccatggaactg |
29935543 |
T |
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| Q |
101 |
cttcatggtaagaatacatatatagaaagaggtattaactctaaattgatttagatatttgcaacttactaagctatttctttagcnnnnnnnnnnnnnn |
200 |
Q |
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| T |
29935542 |
cttcatggtaagaatacatatatagaaagaggtattaactctaaattgatttagatatttgcaacttactaagctatttctttagc-aaaaagtaaaata |
29935444 |
T |
|
| Q |
201 |
nngttaaattatttttgtataagc-------------tacaaactattttgaagaacttataaaaataatttgaacaacttttgaacaaaatcactggct |
287 |
Q |
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| T |
29935443 |
aagttaaattatttttgtataagctagtaaatatttttattaactattttgaagaacttataaaaataagttgaacaacttttgaacaaaatcactgact |
29935344 |
T |
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| Q |
288 |
gttttcataaattctttcaaacaatatctcaaagtt |
323 |
Q |
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| T |
29935343 |
gttttcataaattctttcaaacaatatcttaaagtt |
29935308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 589 - 674
Target Start/End: Complemental strand, 29935311 - 29935226
Alignment:
| Q |
589 |
agttaattctagggcatgagttacttgatcttgcatgctgttgtatttcgatgatttctcatacgatctttgttcgcagccgtggg |
674 |
Q |
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| T |
29935311 |
agttaattctagggcatgagttacttgatcttgcatgctgttgtatttggatgatttctcatacgatcttttttcgcagccgtggg |
29935226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 29932922 - 29932826
Alignment:
| Q |
20 |
caacgccgtcgtttcgagttactggggtatcagtaggcctaaggttcttaaggaagatggaactgagtggccatggaactgcttcatggtaagaata |
116 |
Q |
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|||| |||||||||||||||||||||| |||| |||||| |||||| | ||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29932922 |
caacaccgtcgtttcgagttactggggaatcactaggcccaaggttaaaagggaggatggaactgagtggccatggaactgtttcatggtaagaata |
29932826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 37468588 - 37468624
Alignment:
| Q |
75 |
gatggaactgagtggccatggaactgcttcatggtaa |
111 |
Q |
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| T |
37468588 |
gatggaactgagtggccttggaactgcttcatggtaa |
37468624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 51190839 - 51190892
Alignment:
| Q |
203 |
gttaaattatttttgtataagctacaaactattttgaagaacttataaaaataa |
256 |
Q |
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|||||||| |||||||||||| || || |||| ||||||||||||| ||||||| |
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| T |
51190839 |
gttaaattgtttttgtataagttataagctatcttgaagaacttatgaaaataa |
51190892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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