View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_low_4 (Length: 568)
Name: NF11129_low_4
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 251 - 554
Target Start/End: Complemental strand, 29505335 - 29505039
Alignment:
| Q |
251 |
agtgcctaaaataaaaccagtgtcttcagtcttcactcttcacttcatccagtaaccgttaactgaatggctacaacaccacaacaagttattgagccac |
350 |
Q |
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| T |
29505335 |
agtgcctaaaataaaaccagtgtcttca-------ctcttcacttcatccagtaaccgttaactgaatggctacaacaccacaacaagttattgagccac |
29505243 |
T |
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| Q |
351 |
ttcctcttcaaaaccgagtcgcaatcatcaccggttcatcccgcggaattggtcgcgaaatcgctattcacctgagttcactcggcgctcgaatcgtcat |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29505242 |
ttcctcttcaaaaccgagtcgcaatcatcaccggttcatcccgcggaatcggtcgcgaaatcgctattcacctgagttcactcggcgctcgaatcgtcat |
29505143 |
T |
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| Q |
451 |
caaccactcctcgtccaactcactctccgccgattcgctggccgccgacatcaacgccacatctcccctccctcgagctaccgtcatcggcgccgacatc |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29505142 |
caaccactcctcgtccaactcactctccgccgattcgctggccgccgacatcaacgccacctctcccctccctcgagctaccgtcatcggcgccgacatc |
29505043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 29505473 - 29505374
Alignment:
| Q |
114 |
acgtgatatatgcataaattataaaataaaaaagataattgagctttttaattattccaaaaagtttatctcgtgtaacatgcactttgcttattatatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29505473 |
acgtgatatatgcataaattataaaataaaaaagataattgagctttttaattattccaaaaagtttatctcgtgtaacatgcactttgcttattatatt |
29505374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 29505569 - 29505540
Alignment:
| Q |
17 |
atatcaacaagaatagatctttgttgtttt |
46 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29505569 |
atatcaacaagaatagatctttgttgtttt |
29505540 |
T |
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