View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_low_5 (Length: 534)
Name: NF11129_low_5
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37431900 - 37432133
Alignment:
| Q |
18 |
gtctcgaggacattgcaatcaattcgttagaagaattgtctagcatgaagcaccccatcgagctcttgaaagagatgaagaaggtttcctttaaatccat |
117 |
Q |
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| T |
37431900 |
gtctcgaggacattgcaatcaattcgttagaagaattgtctagcatgaagcaccccatcgagctcttgaaagagatgaagaaggtttcctttaaatccat |
37431999 |
T |
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| Q |
118 |
tatccatgttttcatgggaacctctaatcagaacattgttaaaaacattggaagttcatttactgatttgtctaaaggcatgtactctatccccatcaat |
217 |
Q |
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| T |
37432000 |
tatccatgttttcatgggaacttctaatcagaacattgttaaaaacattggaagttcatttactgatttgtctaaaggcatgtactctatccccatcaat |
37432099 |
T |
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| Q |
218 |
gcacctggttttactttccacaaagcactcaagg |
251 |
Q |
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| T |
37432100 |
gcacctggttttactttccacaaagcactcaagg |
37432133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 316 - 456
Target Start/End: Original strand, 37432232 - 37432372
Alignment:
| Q |
316 |
aatacaaaattaatcacattttttaatgagtgaaaatgacaaaacgacttatagtaataaaatagagaggaagtagatctcatcggatagataacctttc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37432232 |
aatacaaaattaatcacattttttaatgagtgaaaatgacaaaacgacttatagtaataaaatagagaggaagtagatctcatcggatagataacctttc |
37432331 |
T |
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| Q |
416 |
gggagacacgctttaaactatttcttaagcctcgataagtt |
456 |
Q |
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| T |
37432332 |
gggagacgcgctttaaactttttcttaagcctcgaaaagtt |
37432372 |
T |
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