View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11129_low_8 (Length: 415)
Name: NF11129_low_8
Description: NF11129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11129_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 4310264 - 4310513
Alignment:
| Q |
1 |
aaaattagtccaacattcaattttattttatgcatacggttaattaaatgccattggaagcagaactatatctctctaattaagcatgctggaaccttaa |
100 |
Q |
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| T |
4310264 |
aaaattagtccaacattcaattttattttatgcatacggttaattaaatgccattggaagcagaactatatctctctaattaagcatgctggaaccttaa |
4310363 |
T |
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| Q |
101 |
aaagttaaacagcaaaagattcctaatgcttacaaacacttacatgaacatacccagcaaaacatcaattttatgttcttcaggttatcctagaaatcac |
200 |
Q |
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| T |
4310364 |
aaagttaaacagcaaaagattcctaatgcttacaaacacttatatgaacatacccagcaaaacatcaattttatgttcttcaggttatcctagaaatcac |
4310463 |
T |
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| Q |
201 |
attaaagaagaagaaaagataatcaaccaaatccccta-tggttcattat |
249 |
Q |
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| T |
4310464 |
attaaagaagaagaaaagataatcaaccaaatcccctactggttcattat |
4310513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 4252385 - 4252284
Alignment:
| Q |
107 |
aaacagcaaaagattcctaatgcttacaaacacttacatgaacatacc-cagcaaaacatcaattttatgt-tcttcaggttatcctagaaatcacatta |
204 |
Q |
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||||| ||||||| || ||||||||||||||||| | ||||||||||| ||| |||||||||||||| ||| ||||||| ||||||| |||||||||| |
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| T |
4252385 |
aaacaacaaaagactcttaatgcttacaaacactaaaatgaacataccacag-aaaacatcaatttt-tgtgtcttcagattatcct-taaatcacattg |
4252289 |
T |
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| Q |
205 |
aagaa |
209 |
Q |
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||||| |
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| T |
4252288 |
aagaa |
4252284 |
T |
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