View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11130_low_1 (Length: 388)
Name: NF11130_low_1
Description: NF11130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11130_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 355
Target Start/End: Complemental strand, 36495939 - 36495592
Alignment:
| Q |
9 |
agcaaagggaacatgtaagctattgtggatgaaaattgtgcttgatggcataatgataaagtatgagaactggatgaagttattttgtgacaataaatca |
108 |
Q |
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| T |
36495939 |
agcacagggaatatgtgagctattgtggatgaaaattgtgcttgatggcataatgataaagtatgagaactggatgaagttatt--gtgacaataaatca |
36495842 |
T |
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| Q |
109 |
gctcttagtattgcgcataatcttgttcagcatgacagacaaaacacattgcgataaactggcactttatcaaagaaaaaccgaatagcagattgataac |
208 |
Q |
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| T |
36495841 |
gctcttagtattgcgcataatcttgttcagcatgacagacaaaacacattgtgataaactggcactttatcaaagaaaaaccaaatagcagattgataac |
36495742 |
T |
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| Q |
209 |
aactacccacatccttttaagcaccaattagcaatgtctt---aaaatccacatcaacaaaacgattcagccaacttatatgccagcagggaatgatatc |
305 |
Q |
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| T |
36495741 |
aactacccacatccttttaggcaccaattagcaatgtgttaacaaaatccacatcaacaaaacgattcagccaacttatatgccagcagggaatgatatc |
36495642 |
T |
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| Q |
306 |
cattcactagtttgaggaggattgttgtatgttgatatgtaattatttgg |
355 |
Q |
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| T |
36495641 |
cattcactagcttgaggaggattgttgtatgttgatatgtaattatttgg |
36495592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 7707661 - 7707744
Alignment:
| Q |
77 |
actggatgaagttattttgtgacaataaatcagctcttagtattgcgcataatcttgttcagcatgac-agacaaaacacattg |
159 |
Q |
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| T |
7707661 |
actgtatgaagttgttttgtggcaataaatcggccattagtattgcttaaaatcttgttcagcatgacaagacaaaacacattg |
7707744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 27471657 - 27471760
Alignment:
| Q |
82 |
atgaagttattttgtgacaataaatcagctcttagtattgcgcataatcttgttcagcatgaca-gacaaaacacattgcgataaactggcactttatca |
180 |
Q |
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|||||||| ||||||||| | |||||| | ||| |||||| ||||||||||||||| |||| | |||||||||||||| ||| || |||| || |||| |
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| T |
27471657 |
atgaagttgttttgtgactacaaatcatccattaatattgcacataatcttgttcagaatgaaaggacaaaacacattgagattgaccggcatttcatca |
27471756 |
T |
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| Q |
181 |
aaga |
184 |
Q |
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|||| |
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| T |
27471757 |
aaga |
27471760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 14302594 - 14302642
Alignment:
| Q |
82 |
atgaagttattttgtgacaataaatcagctcttagtattgcgcataatc |
130 |
Q |
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| T |
14302594 |
atgaagttgttttgtgacaataaatcgaccattagtattgcgcataatc |
14302642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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