View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11130_low_2 (Length: 329)
Name: NF11130_low_2
Description: NF11130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11130_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 5106292 - 5106597
Alignment:
| Q |
10 |
gcacagatatcctcgccggattcaccatcaaagatttcaagtacatatggtttgagtttctccaatgactcaaacatgtctaatagtttgaacagttttt |
109 |
Q |
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| T |
5106292 |
gcacagatatcctcgccggattcaccatcaaagatttcaagtacatatggtttgagtttctccaatgactcaaacatgtctaatagtttgaacagttttt |
5106391 |
T |
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| Q |
110 |
gtggctctttgttacttctggcgacaccttctccgaatcgaaagaacacggccatgatcttgtctgatattttcacaaagcattctggatggattagccc |
209 |
Q |
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| T |
5106392 |
gtggctctttgttacttctggcgacaccttctccgaatcgaaagaacacggccatgatcttgtctgatattttcacaaagcattctggatggattagccc |
5106491 |
T |
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| Q |
210 |
atctatgatttcgcctagaacactttcgcaaagtttcttttctgataaaagaactttctttgttgcaacttcaaagtgttgtgtccaaagggttattgat |
309 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5106492 |
atctatgatttcgcctagaacgctttcgcaaagtttcttttctgataaaagaactttctttgttgcaacttcaaagtgttgtgtccaaagggttattgat |
5106591 |
T |
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| Q |
310 |
gtttct |
315 |
Q |
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|||||| |
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| T |
5106592 |
gtttct |
5106597 |
T |
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