View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11130_low_3 (Length: 289)

Name: NF11130_low_3
Description: NF11130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11130_low_3
NF11130_low_3
[»] chr7 (19 HSPs)
chr7 (1-269)||(26204277-26204545)
chr7 (1-269)||(26223915-26224182)
chr7 (36-269)||(26260299-26260532)
chr7 (36-266)||(26251275-26251505)
chr7 (11-269)||(26302211-26302469)
chr7 (36-269)||(26297875-26298108)
chr7 (44-269)||(19103034-19103259)
chr7 (36-269)||(26242827-26243060)
chr7 (49-269)||(26207851-26208071)
chr7 (49-269)||(26227412-26227632)
chr7 (23-269)||(26179497-26179743)
chr7 (44-269)||(26191700-26191925)
chr7 (23-269)||(26088196-26088442)
chr7 (23-269)||(26111984-26112230)
chr7 (44-269)||(26129002-26129227)
chr7 (44-269)||(26155623-26155848)
chr7 (79-269)||(26278169-26278356)
chr7 (44-179)||(26186677-26186812)
chr7 (222-269)||(26186862-26186908)
[»] chr4 (1 HSPs)
chr4 (36-269)||(44903680-44903913)
[»] chr5 (3 HSPs)
chr5 (139-188)||(5995044-5995093)
chr5 (128-180)||(17572660-17572712)
chr5 (128-180)||(17620000-17620052)
[»] chr8 (1 HSPs)
chr8 (125-182)||(16908806-16908863)
[»] chr1 (1 HSPs)
chr1 (125-182)||(14869802-14869859)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26204277 - 26204545
Alignment:
Q  1 aaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26204277 aaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaacgagtctgtgttgtatgtaagttttggaagcc 26204376  T
Q  101 ttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatga 200  Q
    ||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26204377 ttactaggctttctcatgaacagattgctgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttagagaaaaggataaagatga 26204476  T
Q  201 tggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204477 tggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 26204545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26223915 - 26224182
Alignment:
Q  1 aaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagcc 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26223915 aaaggatacacagaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaacgagtctgtgttgtatgtaagttttggaagcc 26224014  T
Q  101 ttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatga 200  Q
    ||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26224015 ttactaggctttctcatgaacagattgctgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttagagaaaaggataaagatga 26224114  T
Q  201 tggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26224115 tggtgaagaaggttttctgataga-tttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 26224182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 26260299 - 26260532
Alignment:
Q  36 agaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagta 135  Q
    ||||||| ||||||||||||| |||||    ||||| ||||||||||||||||||||||||||| | |||||||||||| |||  ||| |||||||| ||    
T  26260299 agaattgttaaattggcttaactctaaccctaatgattctgtgttgtatgtaagttttggaagcttgactaggctttcttatgctcaggttgttgaaata 26260398  T
Q  136 gctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaa 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||| ||   ||  || |   ||||  |||||||    ||||||||| |||    
T  26260399 gctcatggacttgaaaattcaggtcataatttcatttgggttgttaggaaaaaagacggaggcgaagtcaaagacagttttcttcatgattttgagcaaa 26260498  T
Q  236 ggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    ||||||||||||||||||||||||||||||||||    
T  26260499 ggatgaaagaaagcaaaaagggctatatcatatg 26260532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 36 - 266
Target Start/End: Original strand, 26251275 - 26251505
Alignment:
Q  36 agaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagta 135  Q
    ||||||| | ||||||||||| || ||| |||||||||| || ||||||||||||||||| ||||||||||||||| ||||||  ||| |||| ||| |     
T  26251275 agaattgcttaattggcttaactcgaagcaaaatgagtcagtattgtatgtaagttttggcagccttactaggcttcctcatgctcagcttgtagaaatt 26251374  T
Q  136 gctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaa 235  Q
    || ||||| ||||||||||||||||||||||| || |||||| | | | || | ||||||||||| | || |||||||||| ||  | | |||||| |||    
T  26251375 gcacatgggcttgaaaattcaggtcataattttatctgggttataaaaaaagatgataaagatgaggatggagaaggttttttgcaaaaatttgaggaaa 26251474  T
Q  236 ggatgaaagaaagcaaaaagggctatatcat 266  Q
    |||||||||||||||| ||||||||||||||    
T  26251475 ggatgaaagaaagcaacaagggctatatcat 26251505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 26302211 - 26302469
Alignment:
Q  11 cggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggct 110  Q
    |||| |||||| ||||||||||   ||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||| ||||||  | |||     
T  26302211 cggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggca 26302310  T
Q  111 ttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaa 210  Q
    | ||||||  ||| |||| ||| | || || || ||||||||||||||||||| ||| |||||||| ||  || || | |||| | |||| | |||||||    
T  26302311 tcctcatgctcagcttgtagaaattgcacacgggcttgaaaattcaggtcatagttttatttgggtcgtacgaaaatatgatagaaatgaggatgaagaa 26302410  T
Q  211 ggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    ||||| |||  ||  |||||| |||||||||||||||||||||| ||||||||||||||    
T  26302411 ggtttcctgcaagtatttgaggaaaggatgaaagaaagcaaaaaaggctatatcatatg 26302469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 26297875 - 26298108
Alignment:
Q  36 agaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagta 135  Q
    ||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| ||||||||||| || |||  ||| |||| ||| |     
T  26297875 agaattgctaaattggcttaattcgaaggaaaatgaatctgtattgtatgtaagttttggcagctttactaggcttccttatgctcagcttgtagaaatt 26297974  T
Q  136 gctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaa 235  Q
    | |||||| ||||||||||||||||||||||| || |||||| | | |    | |||| |||||| | || |||||||||||||  ||| |||||| |||    
T  26297975 gttcatgggcttgaaaattcaggtcataattttatctgggttataaaaagggatgatacagatgaggatggagaaggttttctgcaagaatttgaggaaa 26298074  T
Q  236 ggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    |||| ||||||||||  |||||||||||||||||    
T  26298075 ggattaaagaaagcagcaagggctatatcatatg 26298108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 19103259 - 19103034
Alignment:
Q  44 taaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatgg 143  Q
    ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||| || |||||||||    |||| |||||||| ||| | || || ||    
T  19103259 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggaagtctaactaggcttgaaaatgatcagattgtagaaatcgcacacgg 19103160  T
Q  144 acttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaa 243  Q
     ||||||||||||||||||||||| || |||||||| ||  |||| || | ||||||  ||||| |  |||||||   ||||||||||  ||||||||||    
T  19103159 tcttgaaaattcaggtcataattttatctgggttgtaaggaaaaatgagagagatgagagtgaaaacagttttctacaagattttgaggcaaggatgaaa 19103060  T
Q  244 gaaagcaaaaagggctatatcatatg 269  Q
    |||||||||||||| |||||||||||    
T  19103059 gaaagcaaaaagggatatatcatatg 19103034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 26242827 - 26243060
Alignment:
Q  36 agaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagta 135  Q
    ||||||| |||||||||||||    ||| ||||||||||||| ||||||||||||||||| ||||  |||||| || ||||||  ||| |||| ||| |     
T  26242827 agaattgctaaattggcttaacctgaagcaaaatgagtctgtattgtatgtaagttttggcagccagactaggtttcctcatgctcagcttgtagaaatt 26242926  T
Q  136 gctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaa 235  Q
    ||||| || ||||||||||||||||||||||| || |||||| | | | || | ||||||| ||| | || ||||||||| |||  ||| |||||| |||    
T  26242927 gctcacgggcttgaaaattcaggtcataattttatctgggttataaaaaaagatgataaagttgaggatggagaaggtttcctgcaagaatttgaggaaa 26243026  T
Q  236 ggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    |||||||||||||||| |||||||||||||||||    
T  26243027 ggatgaaagaaagcaacaagggctatatcatatg 26243060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 269
Target Start/End: Original strand, 26207851 - 26208071
Alignment:
Q  49 tggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttg 148  Q
    ||||||||||| |||  |||||| |||||||||||  |||||||||||||| | || || ||  ||||||  |||||||| ||| |||||||||| || |    
T  26207851 tggcttaattcaaagccaaatgattctgtgttgtacataagttttggaagcttgacaagactccctcatgctcagattgtagaaatagctcatggtctgg 26207950  T
Q  149 aaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaag 248  Q
    ||||||| ||||||||||||||||||||||||||  |||| |||  ||| |  |||||||| ||||||||   ||||||| || |||||||||||||||     
T  26207951 aaaattccggtcataatttcatttgggttgttaggaaaaaagatggagaaggaggtgaagatggttttcttgaagattttaagcaaaggatgaaagaaaa 26208050  T
Q  249 caaaaagggctatatcatatg 269  Q
    ||||||||| |||||||||||    
T  26208051 caaaaagggatatatcatatg 26208071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 269
Target Start/End: Original strand, 26227412 - 26227632
Alignment:
Q  49 tggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttg 148  Q
    ||||||||||| |||   ||||| ||||||||||||||||||||||||||| | || || || ||||||   |||||||| ||| |||||||||| ||||    
T  26227412 tggcttaattcaaagccgaatgattctgtgttgtatgtaagttttggaagcttgacaagactctctcattcccagattgtagaaatagctcatggtcttg 26227511  T
Q  149 aaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttc-tgatagattttgagaaaaggatgaaagaaa 247  Q
    ||||||||||||||||||||||||||||||||||  |||| |||  ||| |  |  ||||| || |||| |||| |||||| || |||||||||||||||    
T  26227512 aaaattcaggtcataatttcatttgggttgttaggaaaaaagatggagaaggagacgaagacgggtttcttgat-gattttaagcaaaggatgaaagaaa 26227610  T
Q  248 gcaaaaagggctatatcatatg 269  Q
     ||||||||| |||||||||||    
T  26227611 acaaaaagggatatatcatatg 26227632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 269
Target Start/End: Original strand, 26179497 - 26179743
Alignment:
Q  23 ttggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaaca 122  Q
    ||||||||||  |||||| | ||||||||||||| || ||| ||||||||||||| || |||||||||||||| ||||||  |||| || | ||||  ||    
T  26179497 ttggaaaagaggaagaatggctaaattggcttaactcaaagcaaaatgagtctgtattatatgtaagttttggtagccttgttaggtttccgcatgctca 26179596  T
Q  123 gattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgata 222  Q
    | |||| ||| | || || || |||||||| |||||||| ||||| || |||||| | | | || | ||||||||||| | || ||||||||| |||  |    
T  26179597 gcttgtagaaattgcgcacgggcttgaaaactcaggtcaaaattttatctgggttataaaaaaatatgataaagatgaagatggagaaggtttcctgcaa 26179696  T
Q  223 gattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    || |||||| ||||| |||||||||||||||||||||||||||||||    
T  26179697 gaatttgaggaaaggttgaaagaaagcaaaaagggctatatcatatg 26179743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 26191700 - 26191925
Alignment:
Q  44 taaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatgg 143  Q
    ||||||||||||| || ||| |||||||||||||  | |||||||| ||||||||  | ||||||||  ||||||  ||| |||| ||| | || |||||    
T  26191700 taaattggcttaactcaaagcaaaatgagtctgtactttatgtaagctttggaagtttaactaggctaactcatgctcagcttgtagaaattgcacatgg 26191799  T
Q  144 acttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaa 243  Q
     ||||||||||||||||||||||| || |||||||| ||  |||| ||||  |||||  ||||| |  |||| ||   ||||||||||  ||||||||||    
T  26191800 gcttgaaaattcaggtcataattttatctgggttgtaaggaaaaatgatatggatgagagtgaaaacagtttcctacaagattttgagggaaggatgaaa 26191899  T
Q  244 gaaagcaaaaagggctatatcatatg 269  Q
    ||||||||||||||||||||||||||    
T  26191900 gaaagcaaaaagggctatatcatatg 26191925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 269
Target Start/End: Original strand, 26088196 - 26088442
Alignment:
Q  23 ttggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaaca 122  Q
    ||||||||||  |||| | | ||||||||||||| || |||||||||||||| || |||||||||||||||||||| || | |||||||  | |||  ||    
T  26088196 ttggaaaagaggaagagtggctaaattggcttaactcaaaggaaaatgagtccgtattgtatgtaagttttggaagtctaattaggcttgataatgctca 26088295  T
Q  123 gattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgata 222  Q
    |||||| ||| | || || || || |||||||||||||||||||| || |||||||| ||  || | || |  |||||  ||||| |   ||| ||   |    
T  26088296 gattgtagaaattgcacacggtctcgaaaattcaggtcataattttatctgggttgtaaggaaatatgagagggatgagagtgaaaacactttccttcaa 26088395  T
Q  223 gattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  26088396 gattttgaggaaaggatgaaagaaagcaaaaagggctatatcatatg 26088442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 269
Target Start/End: Original strand, 26111984 - 26112230
Alignment:
Q  23 ttggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaaca 122  Q
    ||||||||||  |||| | | ||||||||||||| || |||||||||||||| || |||||||||||||||||||| || | |||||||  | |||  ||    
T  26111984 ttggaaaagaggaagagtggctaaattggcttaactcaaaggaaaatgagtccgtattgtatgtaagttttggaagtctaattaggcttgataatgctca 26112083  T
Q  123 gattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgata 222  Q
    |||||| ||| | || || || || |||||||||||||||||||| || |||||||| ||  || | || |  |||||  ||||| |   ||| ||   |    
T  26112084 gattgtagaaattgcacacggtctcgaaaattcaggtcataattttatctgggttgtaaggaaatatgagagggatgagagtgaaaacactttccttcaa 26112183  T
Q  223 gattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  26112184 gattttgaggaaaggatgaaagaaagcaaaaagggctatatcatatg 26112230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 26129002 - 26129227
Alignment:
Q  44 taaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatgg 143  Q
    ||||||||||||| || ||| |||||||||| ||  ||||||||||||||||||| || |||||||||  | |||  |||||||| ||| | || || ||    
T  26129002 taaattggcttaactcaaagcaaaatgagtccgtactgtatgtaagttttggaagtctaactaggcttgataatgctcagattgtagaaattgcacacgg 26129101  T
Q  144 acttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaa 243  Q
     || |||||||||||||||||||| || |||||||| ||  ||||||| |  |||||  ||||| |   ||| ||   |||||||||| |||||||||||    
T  26129102 tctcgaaaattcaggtcataattttatatgggttgtaaggaaaaaggagagcgatgagagtgaaaacaatttccttcaagattttgaggaaaggatgaaa 26129201  T
Q  244 gaaagcaaaaagggctatatcatatg 269  Q
    ||||| ||||||||||||||||||||    
T  26129202 gaaagaaaaaagggctatatcatatg 26129227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 26155623 - 26155848
Alignment:
Q  44 taaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatgg 143  Q
    |||||||||||||  | ||| |||||||||| || |||||||||||||||||||| || |||||||||  | |||  |||||||| ||| | || || ||    
T  26155623 taaattggcttaacacaaagcaaaatgagtccgtattgtatgtaagttttggaagtctaactaggcttgataatgctcagattgtagaaattgcacacgg 26155722  T
Q  144 acttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaa 243  Q
     || |||||||||||||||||||| || |||||||| ||  ||||||| |  |||||  ||||| |   ||| ||   |||||||||| |||||||||||    
T  26155723 tctcgaaaattcaggtcataattttatctgggttgtaaggaaaaaggagagcgatgagagtgaaaacactttccttcaagattttgaggaaaggatgaaa 26155822  T
Q  244 gaaagcaaaaagggctatatcatatg 269  Q
    |||||||||||||| |||||||||||    
T  26155823 gaaagcaaaaagggatatatcatatg 26155848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 269
Target Start/End: Original strand, 26278169 - 26278356
Alignment:
Q  79 ttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttg 178  Q
    ||||||||||| ||||| ||||||| ||||||| ||||||  ||| |||| ||| | || || || ||||||||||||||||||||||| || ||||||     
T  26278169 ttgtatgtaagctttggcagccttattaggcttcctcatgctcagcttgtagaaattgcacacgggcttgaaaattcaggtcataattttatctgggtta 26278268  T
Q  179 ttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    | |   ||||  |||||||||| | || ||||||||| |||  ||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  26278269 taa---aaaataataaagatgaggatggagaaggtttcctgcaagaatttgagaaaaggatgaaagaaagcaacaagggctacatcatatg 26278356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 26186677 - 26186812
Alignment:
Q  44 taaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagtagctcatgg 143  Q
    ||||||||||||| || ||| ||| |||||| ||  ||||| |||||||||||||  | |||||||||  | |||  |||||||| ||| | || || ||    
T  26186677 taaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgctcagattgtagaaattgcacacgg 26186776  T
Q  144 acttgaaaattcaggtcataatttcatttgggttgt 179  Q
     ||||||||||||| ||||||||| || ||||||||    
T  26186777 tcttgaaaattcagatcataattttatctgggttgt 26186812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 26186862 - 26186908
Alignment:
Q  222 agattttgagaaaaggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    ||||||||||||| | |||||||||||||||||||| |||||||||||    
T  26186862 agattttgagaaa-gaatgaaagaaagcaaaaagggatatatcatatg 26186908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 44903680 - 44903913
Alignment:
Q  36 agaattggtaaattggcttaattctaaggaaaatgagtctgtgttgtatgtaagttttggaagccttactaggctttctcatgaacagattgttgaagta 135  Q
    ||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||  ||| |||| ||| |     
T  44903680 agaattgctaaattggcttaactcaaagcaaaatgagtctgtgttgtatgtaagttttggaagccttactaagctttttcatgctcagcttgtagaaatt 44903779  T
Q  136 gctcatggacttgaaaattcaggtcataatttcatttgggttgttagagaaaaggataaagatgatggtgaagaaggttttctgatagattttgagaaaa 235  Q
    || ||||| |||||||| |||||||||||||| || |||||||| ||  |||| |||| ||| ||    || |||||||| |||  |||||||||| |||    
T  44903780 gcacatgggcttgaaaagtcaggtcataattttatctgggttgtaaggaaaaatgatagagacgagaacgaggaaggtttcctgcaagattttgaggaaa 44903879  T
Q  236 ggatgaaagaaagcaaaaagggctatatcatatg 269  Q
    || ||||||||||||| |||||||||||||||||    
T  44903880 gggtgaaagaaagcaacaagggctatatcatatg 44903913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 5995093 - 5995044
Alignment:
Q  139 catggacttgaaaattcaggtcataatttcatttgggttgttagagaaaa 188  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  5995093 catgcacttgaaaattcaggtcataatttcatttgggttgttagaaaaaa 5995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 17572712 - 17572660
Alignment:
Q  128 ttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgtt 180  Q
    ||||| ||||||||| |||||||| |||| | ||| |||||||||||||||||    
T  17572712 ttgaaatagctcatgcacttgaaacttcaagccatgatttcatttgggttgtt 17572660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 17620000 - 17620052
Alignment:
Q  128 ttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgtt 180  Q
    ||||| ||||||||| |||||||  |||| | |||||||||||||||||||||    
T  17620000 ttgaaatagctcatgcacttgaagcttcaagccataatttcatttgggttgtt 17620052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 16908863 - 16908806
Alignment:
Q  125 ttgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttag 182  Q
    |||||||| ||||||||| ||||||| |||| || ||| |||||||||||||||||||    
T  16908863 ttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttag 16908806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 14869802 - 14869859
Alignment:
Q  125 ttgttgaagtagctcatggacttgaaaattcaggtcataatttcatttgggttgttag 182  Q
    |||||||| ||||||||| ||||||| |||| || ||| |||||||||||||||||||    
T  14869802 ttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttag 14869859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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