View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11130_low_4 (Length: 229)
Name: NF11130_low_4
Description: NF11130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11130_low_4 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 3070259 - 3070037
Alignment:
| Q |
7 |
catccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3070259 |
catccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaa |
3070160 |
T |
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| Q |
107 |
agcaaaaccaacactggcataaggggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatg |
206 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3070159 |
agcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggttgatgtgtatagttatg |
3070060 |
T |
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| Q |
207 |
gtgtagtgctacttgagataatt |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
3070059 |
gtgtagtgctacttgagataatt |
3070037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 3035789 - 3036007
Alignment:
| Q |
11 |
cattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaaagca |
110 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3035789 |
cattgtgacataaagcctcaaaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagttgttgaacatgaatcaaagca |
3035888 |
T |
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| Q |
111 |
aaaccaacactggcataaggggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgt |
210 |
Q |
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| T |
3035889 |
aaaccaacaccggcataagaggaataaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgt |
3035988 |
T |
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| Q |
211 |
agtgctacttgagataatt |
229 |
Q |
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| T |
3035989 |
agtgctacttgagataatt |
3036007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 3056654 - 3056875
Alignment:
| Q |
8 |
atccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaaa |
107 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
3056654 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaa |
3056753 |
T |
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| Q |
108 |
gcaaaaccaacactggcataaggggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatgg |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056754 |
gcaaaaccaacactggcataagaggaacaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatgg |
3056853 |
T |
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| Q |
208 |
tgtagtgctacttgagataatt |
229 |
Q |
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|||||||||||||||||||||| |
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| T |
3056854 |
tgtagtgctacttgagataatt |
3056875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 21457568 - 21457736
Alignment:
| Q |
13 |
ttgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaaagcaaa |
112 |
Q |
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|||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| || |
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| T |
21457568 |
ttgtgacataaagcctcaaaacatacccattgatgattacttcaatgcaagaatttctgactttggattagcaaaattgttgaacatgaatttgagcgaa |
21457667 |
T |
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| Q |
113 |
accaacactggcataaggggaacaaaagggtatgttgcacttgaatgg-tttaaaaacatgcctatcac |
180 |
Q |
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|||||||||| ||||||||||| |||| ||||| || ||||||||||| ||||||||||||| |||||| |
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| T |
21457668 |
accaacactgccataaggggaagaaaatggtatctttcacttgaatggttttaaaaacatgcatatcac |
21457736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 28488044 - 28488189
Alignment:
| Q |
7 |
catccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaa |
106 |
Q |
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|||||||||||| |||||||| || || ||||| || |||||| | | ||||||||| ||||| |||||||||||| ||||||| ||| || |||||| |
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| T |
28488044 |
catccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggattatcaaagctattgttgattaatcaa |
28488143 |
T |
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| Q |
107 |
agcaaaaccaacactggcataaggggaacaaaagggtatgttgcac |
152 |
Q |
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||| | || | ||||| || || |||||||||||||||||||||| |
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| T |
28488144 |
agccacactgaaactggaattagaggaacaaaagggtatgttgcac |
28488189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 28445437 - 28445582
Alignment:
| Q |
7 |
catccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaa |
106 |
Q |
| |
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||||||||| || |||||||| || || ||||| || |||||| | | ||||||||||||||| |||||||||||||||||| | ||| || |||||| |
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| T |
28445437 |
catccattgcgatataaagccacaaaatatacttctagatgatcaatacaatgcaagaatttcagattttggattagcaaagttattgttgattaatcaa |
28445536 |
T |
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| Q |
107 |
agcaaaaccaacactggcataaggggaacaaaagggtatgttgcac |
152 |
Q |
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||| | ||| | ||||| ||||| ||||| || || |||||||||| |
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| T |
28445537 |
agccataccgaaactggaataagaggaactaagggatatgttgcac |
28445582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 28466283 - 28466428
Alignment:
| Q |
7 |
catccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaa |
106 |
Q |
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|||||||||||| |||||||| || || ||||| || |||||| | | ||||||||| ||||| |||||||||||| ||||||| ||| || |||||| |
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| T |
28466283 |
catccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggattatcaaagctattgttgattaatcaa |
28466382 |
T |
|
| Q |
107 |
agcaaaaccaacactggcataaggggaacaaaagggtatgttgcac |
152 |
Q |
| |
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||| | || | ||||| || || ||||| |||||||||||||||| |
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| T |
28466383 |
agccacactgaaactggaattagaggaaccaaagggtatgttgcac |
28466428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 28437988 - 28438068
Alignment:
| Q |
7 |
catccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagcaaa |
87 |
Q |
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||||||||||||||||||||| || |||||||| || |||||| | | |||||| | ||||| ||||| || |||||||| |
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| T |
28437988 |
catccattgtgacataaagccacaaaacatacttctagatgatgattacaatgctaagatttccgatttcggtttagcaaa |
28438068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 11004904 - 11004968
Alignment:
| Q |
20 |
ataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggattagc |
84 |
Q |
| |
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||||||||||| ||||| || |||||||| | |||||| ||| | ||||||||||||||||||| |
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| T |
11004904 |
ataaagcctcataacatccttcttgatgaaaatttcaatccaaaagtttctgattttggattagc |
11004968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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