View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11130_low_5 (Length: 226)
Name: NF11130_low_5
Description: NF11130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11130_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 19983413 - 19983262
Alignment:
| Q |
25 |
cttaagtgtcgataatattgcttagattcagttccaatattgcttagattcacttcactttgttttctgcacttcattatttcttcatcacatttactaa |
124 |
Q |
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| T |
19983413 |
cttaagtgtcgataatattgcttagattcagttccaatattgcttagattcacttcactttgtttcctgcacttcattattacttcatcacatttactaa |
19983314 |
T |
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| Q |
125 |
ttaacataatcatatcagttaataaaaatatataccatagctcatcaaaact |
176 |
Q |
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| T |
19983313 |
gtaacataatcatatcagttaataaaaatatataccataactcatcaaaact |
19983262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 20047492 - 20047416
Alignment:
| Q |
132 |
aatcatatcagttaataaaaatatataccatagctcatcaaaactaatataagaatttatccttcatttgttatcaa |
208 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
20047492 |
aatcatatcagttaataaaaatatatagcataactcatcaaaactaatcttaaaatttatccttcatttgttatcaa |
20047416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 19983242 - 19983199
Alignment:
| Q |
165 |
ctcatcaaaactaatataagaatttatccttcatttgttatcaa |
208 |
Q |
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| T |
19983242 |
ctcatcaaaactaatataagaatttatccttcatttgttatcaa |
19983199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 20014626 - 20014667
Alignment:
| Q |
132 |
aatcatatcagttaataaaaatatataccatagctcatcaaa |
173 |
Q |
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| T |
20014626 |
aatcatatcagttaataaaaacatatatcataactcatcaaa |
20014667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 26648790 - 26648745
Alignment:
| Q |
135 |
catatcagttaataaaaatatataccatagctcatcaaaactaata |
180 |
Q |
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|||||||||| ||||||||||||| |||| ||||| |||||||||| |
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| T |
26648790 |
catatcagttgataaaaatatatatcataactcattaaaactaata |
26648745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 1718831 - 1718749
Alignment:
| Q |
126 |
taacataatcatatcagttaataaaaatatatac--catagctcatcaaaactaatataagaatttatccttcatttgttatcaa |
208 |
Q |
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||||| || ||||||||||||||||||| ||||| |||| ||||| ||||||||||| | ||| |||||||||||||||||| |
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| T |
1718831 |
taacacaagcatatcagttaataaaaatttatacatcataactcattaaaactaatat--tactttctccttcatttgttatcaa |
1718749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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