View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_high_2 (Length: 628)
Name: NF11131_high_2
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 274 - 473
Target Start/End: Original strand, 22181720 - 22181920
Alignment:
| Q |
274 |
atcaaacacaagtaatcaatttcataactgaacatgctaatcaagaagaaacattaacgacttaattttatttccaaaattaccacaattaactcttcct |
373 |
Q |
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| T |
22181720 |
atcaaacacaagtaatcaatttcataactgaacatgctaatcaagaagaaacattaacgacttaattttatttccaaaattaccacaattaactcttcct |
22181819 |
T |
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| Q |
374 |
ccataaaactaaatttcaatataaatctaaatccaataacagacc-aaaaaatgcatcgtaacctcgttttctccgacatttaacatcaaaatttcaatt |
472 |
Q |
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| T |
22181820 |
ccataaaactaaatttcaatataaatctaaatccaataacagaccaaaaaaatgcatcgtaacctcgttttctccgacatttaacatcaaaatttcaatt |
22181919 |
T |
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| Q |
473 |
t |
473 |
Q |
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| T |
22181920 |
t |
22181920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 22181466 - 22181655
Alignment:
| Q |
17 |
gagacggagagagtagttggctggcctaatttacagcttaaatgtcaggctgagtgttggagctttccatttcaagtacctattctcgatattgatgaaa |
116 |
Q |
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| T |
22181466 |
gagacggagagagtagttggctggcctaatttacggcttaaatgtcaggctgagtgttggagctttccatttcaagtacctattctcgatattgatgaaa |
22181565 |
T |
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| Q |
117 |
tacaacaacttataaatctctactgctactaccacctaagccatctccaaatcctttaacaactaccctccattcaattcgaatgaaatagta |
209 |
Q |
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| T |
22181566 |
tacaacaacttataaatctctactgctact---acctaagccatctccaaatcctttaacaactaccctccattcaattcgaatgaaatagta |
22181655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 507 - 557
Target Start/End: Original strand, 22181962 - 22182012
Alignment:
| Q |
507 |
caagcattgaattcacctataacactagtgcgaatttgagtgagtcgcatt |
557 |
Q |
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| T |
22181962 |
caagcattgaattcacctataacactagtgcgaatttgagtgagtcgcatt |
22182012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 22182045 - 22182087
Alignment:
| Q |
568 |
atagagcaagtaatgatgaacctggtgaggctacggaggaggaaga |
613 |
Q |
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| T |
22182045 |
atagagcaagtaatga---acctggtgaggctacggaggaggaaga |
22182087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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