View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_high_25 (Length: 250)
Name: NF11131_high_25
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 9015387 - 9015143
Alignment:
| Q |
1 |
cccaagcaaaacagtctttgtacttcttcaaaagtgcaactaattgaaccttaagttttgggccaattttaaaacttatgtaagttggcctttttattga |
100 |
Q |
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| T |
9015387 |
cccaagcaaaacagtctttgtacttcttcaaaagtgcaactatttgaaccttaagttttgggccaatattaaaacttatgtaagttggcctttttattga |
9015288 |
T |
|
| Q |
101 |
tccatcttccaaatcaatttctttcaaagaatcttgaacctggatctttttcgtttcaagagaaggatatttctcaaaacctaaaggctcttcataaaaa |
200 |
Q |
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| T |
9015287 |
ttcatctcccaaatcaatttcttccaaagaatcttgaacctagatctttttcgtttcaagataaggatatttttcaaaacctaaaggctcttcataaaaa |
9015188 |
T |
|
| Q |
201 |
atgcagtcgagcttttgaccctaaaccattatttcctttgcttct |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9015187 |
atgcagtcgagcttttgaccctaaaccattatttcctttggttct |
9015143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 16034063 - 16034238
Alignment:
| Q |
9 |
aaacagtctttgtacttcttcaaaagtgcaactaattgaaccttaagttttgggccaattttaaaacttatgtaagttggcctttttattgatccatctt |
108 |
Q |
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|||||||||||||||||||| | |||||||| || ||||||||||| || ||| ||||||||| ||||||||||||||| ||||||||||| ||||| |
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| T |
16034063 |
aaacagtctttgtacttctttagaagtgcaattatttgaaccttaaattctggaccaattttagaacttatgtaagttgtcctttttattgttccatacc |
16034162 |
T |
|
| Q |
109 |
ccaaatcaatttctttcaaagaatcttgaacctggatctttttcgtttcaagagaaggatatttctcaaaacctaa |
184 |
Q |
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| T |
16034163 |
ccaaatcaatttcctccaaaggatcctgagcttggatcttttttgtttcaagagagggatctttctcaaaacctaa |
16034238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 13276672 - 13276873
Alignment:
| Q |
1 |
cccaagcaaaacagtctttgtacttcttcaaaagtgcaactaattgaacctt-aagttttgggccaattttaaaacttatgtaagttggcctttttattg |
99 |
Q |
| |
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||||||||||| ||| | |||||||||| | ||||||||||| | ||||||| || | |||||||||||| |||||||||||||||||| |||||| | |
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| T |
13276672 |
cccaagcaaaaaagtatgtgtacttctttagaagtgcaactattcgaaccttgaactcctgggccaattttggaacttatgtaagttggccattttatcg |
13276771 |
T |
|
| Q |
100 |
atccatcttccaaatcaatttctttcaaagaatcttgaacctggatctttttcgtttcaagagaaggatatttctcaaaacctaaaggctcttcataaaa |
199 |
Q |
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||||||| ||||||||||||| | |||| || |||| | ||||||||| | |||||||||||||| | |||||||||||||||||| || |||| ||| |
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| T |
13276772 |
atccatcccccaaatcaatttcctctaaaggattttgagcttggatctttgtggtttcaagagaagggtctttctcaaaacctaaaggttcatcatcaaa |
13276871 |
T |
|
| Q |
200 |
aa |
201 |
Q |
| |
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|| |
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| T |
13276872 |
aa |
13276873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 16164643 - 16164876
Alignment:
| Q |
1 |
cccaagcaaaacagtctttgtacttcttcaaaagtgcaactaattgaaccttaagttttgggccaattttaaaacttatgtaagttggcctttttattga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| || ||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |
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| T |
16164643 |
cccaagcaaatatgtctttgtacttctttaaaagtgcaattatttgaaccttaaattcgaggccaattttagaacttatgtaagttggcctttttattga |
16164742 |
T |
|
| Q |
101 |
tccatcttccaaatcaatttctttcaaagaatcttgaacctggatctttttcgtttcaagagaaggatatttctcaaaacctaaaggctcttcataaaaa |
200 |
Q |
| |
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|| || | | |||||||| |||| ||||| ||| || ||| ||||||||| |||||||| ||| |||||||||||||||||||||| || |||| ||| |
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| T |
16164743 |
tctatttcctaaatcaatctcttccaaaggatcccgagccttgatctttttggtttcaagggaatgatatttctcaaaacctaaaggttcatcatcaaag |
16164842 |
T |
|
| Q |
201 |
atgcagtcgagcttttgaccctaaaccattattt |
234 |
Q |
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||||| || || ||||| || | ||||||||||| |
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| T |
16164843 |
atgcaatcaagtttttggccttcaaccattattt |
16164876 |
T |
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