View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_high_29 (Length: 240)
Name: NF11131_high_29
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 44013236 - 44013031
Alignment:
| Q |
20 |
agatggtaaaagaccacaaaaatatttgataagttaggactcggcaagtgttt-gtgaatttcactactaaactcttctgnnnnnnnnnnnnnnnnnnnn |
118 |
Q |
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| T |
44013236 |
agatggtaaaaaaccgcagaaacatttgataagttaggactcggcaagtgttttgtgaatttcactactagactcttctgaaaaggaaaaaaaatcaaaa |
44013137 |
T |
|
| Q |
119 |
ncttgttactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttatttatggttatttattgaaggacattttattagttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44013136 |
acttgttactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttatttatggttatttattgaaggacattttattagttc |
44013037 |
T |
|
| Q |
219 |
cctatg |
224 |
Q |
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|||||| |
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| T |
44013036 |
cctatg |
44013031 |
T |
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