View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11131_high_4 (Length: 502)

Name: NF11131_high_4
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11131_high_4
NF11131_high_4
[»] chr7 (4 HSPs)
chr7 (13-488)||(9015492-9015967)
chr7 (16-481)||(13276100-13276566)
chr7 (17-202)||(16033762-16033947)
chr7 (382-458)||(16033530-16033606)
[»] chr6 (4 HSPs)
chr6 (13-377)||(16164174-16164538)
chr6 (13-437)||(19724171-19724577)
chr6 (121-463)||(17806915-17807258)
chr6 (399-485)||(16164087-16164173)
[»] chr3 (4 HSPs)
chr3 (19-316)||(8990569-8990865)
chr3 (184-484)||(268595-268896)
chr3 (121-228)||(14139385-14139492)
chr3 (121-228)||(14140197-14140304)
[»] chr4 (2 HSPs)
chr4 (138-275)||(12813800-12813937)
chr4 (184-278)||(14770972-14771066)
[»] scaffold0093 (1 HSPs)
scaffold0093 (121-226)||(49371-49476)
[»] chr5 (1 HSPs)
chr5 (130-226)||(26866293-26866389)
[»] scaffold0107 (1 HSPs)
scaffold0107 (342-472)||(5990-6120)
[»] chr2 (3 HSPs)
chr2 (121-463)||(25114362-25114705)
chr2 (387-472)||(24915583-24915668)
chr2 (382-418)||(23812263-23812299)
[»] scaffold0656 (1 HSPs)
scaffold0656 (342-472)||(6896-7026)
[»] scaffold0293 (1 HSPs)
scaffold0293 (197-251)||(5324-5378)
[»] scaffold0001 (1 HSPs)
scaffold0001 (342-472)||(92916-93046)
[»] chr8 (1 HSPs)
chr8 (342-472)||(22069606-22069736)
[»] chr1 (1 HSPs)
chr1 (342-472)||(21295805-21295935)
[»] scaffold0053 (1 HSPs)
scaffold0053 (142-466)||(40481-40806)
[»] scaffold0401 (1 HSPs)
scaffold0401 (121-221)||(5400-5500)
[»] scaffold0013 (1 HSPs)
scaffold0013 (183-278)||(150605-150700)
[»] scaffold0005 (1 HSPs)
scaffold0005 (184-278)||(68664-68758)


Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 13 - 488
Target Start/End: Original strand, 9015492 - 9015967
Alignment:
Q  13 cagatcatgtcgaagattaaagaggaaatcgaaagactccttagaagcaagtttattagaaccgcaaggcatattgagtggttagcaaacattgcttctg 112  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  9015492 cagatcatgtcgaagattaaagaggaaatcgaaagactcctcaaaagcaagtttattagaaccgcaaggcatgttgagtggttagcaaacattgctcctg 9015591  T
Q  113 taattattaaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgct 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9015592 taattaataaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgct 9015691  T
Q  213 agttgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaatttcatcgctgatgaagatgtgtctaaaacaacat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9015692 agttgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaatttcatcgctgatgaacatgtgtctaaaacaacat 9015791  T
Q  313 tttggtgtccaggagatttaggcacgtacgaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtt 412  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  9015792 ttcggtgtccaggagatttaggcacgtacgaatgggtagtaattcctttcggcttaaagaatgttgattctacataccaaagagtaatgaattcaatgtt 9015891  T
Q  413 tcatgattttgttgataaatttatgcatatttacagtgatgatattgttgtaaattcttcgttggaagatgataat 488  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9015892 tcatgattttgttgataaatttatgcagatttatagtgatgatattgttgtaaattcttcgttggaagatgataat 9015967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 481
Target Start/End: Complemental strand, 13276566 - 13276100
Alignment:
Q  16 atcatgtcgaagattaaagaggaaatcgaaagactccttagaagcaagtttattagaaccgcaaggcatattgagtggttagcaaacattgcttctgtaa 115  Q
    |||||||| ||||||||||||||||||||||||||| | | |||||| || || ||||| |||||| || |||| | ||||||||| |||| | ||||||    
T  13276566 atcatgtctaagattaaagaggaaatcgaaagactcatcaaaagcaaattcatcagaactgcaaggtatgttgaattgttagcaaatattgttcctgtaa 13276467  T
Q  116 ttattaaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagt 215  Q
    |||  |||| ||||  |||||||||||||||||||||| ||||| | ||||||||||||||||  ||| || |||  ||||| || | ||| ||||||||    
T  13276466 ttaagaaaattggatctcttagagtttgtatagactttggagacttaaacaatgctacaccaacagataaacatctcatgccggtagaagagatgctagt 13276367  T
Q  216 tgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaa-tttcatcgctgatgaagatgtgtctaaaacaacattt 314  Q
    |  ||||||| || |||||||||||||||||||||| ||| |||||||  |||| ||||||| ||||||  ||||  |||||||||| ||||||||||||    
T  13276366 tcgttctgcaacaggatttgaatacttgagtatgcttgatggctattccggttataatcaaattttcattactgaataagatgtgtcaaaaacaacattt 13276267  T
Q  315 tggtgtccaggagatttaggcacgtacgaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttc 414  Q
    || || ||||||| |||||| || || ||||||||| |||| ||||| ||| || |||||| |||| |||||||||||| || ||||||||||||||||     
T  13276266 tgatgcccaggagctttaggtacttatgaatgggtaataatgccttttggcctagagaatgttggtgctacataccaaatagcaatgaattcaatgttta 13276167  T
Q  415 atgattttgttgataaatttatgcatatttacagtgatgatattgttgtaaattcttcgttggaaga 481  Q
    |||||||  |||  ||||||||||| || |||| |||||||||||| ||||| ||||||| ||||||    
T  13276166 atgatttcattggcaaatttatgcaaatctacattgatgatattgtggtaaaatcttcgtcggaaga 13276100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 16033947 - 16033762
Alignment:
Q  17 tcatgtcgaagattaaagaggaaatcgaaagactccttagaagcaagtttattagaaccgcaaggcatattgagtggttagcaaacattgcttctgtaat 116  Q
    |||||||||||||| |||||||||||  ||||||||| | ||||||||| |||||||| |||||| || |||| ||||||||||| |||| | |||||||    
T  16033947 tcatgtcgaagattgaagaggaaatctgaagactcctcaaaagcaagttcattagaactgcaaggtatgttgaatggttagcaaatattgttcctgtaat 16033848  T
Q  117 tattaaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtgg 202  Q
    ||  |||||||||  |||||||||||| ||| ||||||| ||  | |||||||||||||||||||||||||||| |||||||||||    
T  16033847 taagaaaaatggatctcttagagtttgaataaactttagggatttcaacaatgctacaccaaaggatgaatatcttatgccagtgg 16033762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 16033606 - 16033530
Alignment:
Q  382 ctacataccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcatatttacagtgatgatatt 458  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  16033606 ctacataccaaagagaaatgagttcaatgtttcatgattttattgataaatttatgcaaatttacattgatgatatt 16033530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 16164538 - 16164174
Alignment:
Q  13 cagatcatgtcgaagattaaagaggaaatcgaaagactccttagaagcaagtttattagaaccgcaaggcatattgagtggttagcaaacattgcttctg 112  Q
    |||||||||| ||| |||||||| ||||||||||||||||| | ||||||||| |||||||| |||||| ||||||||||||||||||| |||  | ||     
T  16164538 cagatcatgttgaatattaaagatgaaatcgaaagactcctcaaaagcaagttcattagaactgcaaggtatattgagtggttagcaaatatttttccta 16164439  T
Q  113 taattattaaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgct 212  Q
    ||||||  |||||||||| |||||   ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||    
T  16164438 taattaagaaaaatggaactcttac--tttttatagactttagagacctgaacaatgctacaccaaaggatgcatatcctatgccagtggcacaaatgct 16164341  T
Q  213 agttgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaat-ttcatcgctgatgaagatgtgtctaaaacaaca 311  Q
    |||||||||||||||| ||||||||||| |||||||||||||  |||||||| ||||||||||||| ||||| ||||| ||| |||| || |||||| ||    
T  16164340 agttgattctgcagcaggatttgaatacatgagtatgctcgacggctattctggttacaatcaaatattcattgctgaagaacatgtatcaaaaacatca 16164241  T
Q  312 ttttggtgtccaggagatttaggcacgtacgaat-gggtagtaattcctttcggcttaaagaatgct 377  Q
    |||   ||||||| || |||||| || ||||||| |||||||||||||||| ||| || ||||||||    
T  16164240 tttcaatgtccagaagctttaggtacttacgaatggggtagtaattccttttggcctatagaatgct 16164174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 19724171 - 19724577
Alignment:
Q  13 cagatcatgtcgaagattaaagaggaaatcgaaagactccttagaagcaagtttattagaaccgcaaggcatattgagtggttagcaaacattgcttctg 112  Q
    ||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||| |||||| |  |||| ||||||||||| |||| |  |     
T  19724171 cagatcatgtcgaagattaaagaggaaatcgaaagactcctcaaaatcaagttcattagaactgcaaggtacgttgaatggttagcaaatattgttcttt 19724270  T
Q  113 taattattaaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgct 212  Q
    | ||||  |||||||||| ||||| ||| |||||||||| || ||||||||||||||||||||     ||||||||||| ||||               |    
T  19724271 tgattaagaaaaatggaactcttatagtctgtatagactataaagacctgaacaatgctacaca----gatgaatatcccatgc---------------t 19724351  T
Q  213 agttgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaatt-tcatcgctgatgaagatgtgtctaaaacaaca 311  Q
    | ||||||| |||||| | ||||||||||| |||||| | ||| | |||| | |||||||| ||||  |||| ||||| |||||  |||| |||||||||    
T  19724352 aattgattcagcagcaggttttgaatactttagtatgtttgatggttattttggttacaataaaatcctcattgctgaagaagaaatgtcaaaaacaaca 19724451  T
Q  312 ttttggtgtccaggagatttaggcacgtacgaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgt 411  Q
    ||| | ||||  |||| ||||||||| |||||||||||||| || ||||| ||  ||||||||| |||| ||||| ||||||||| |||||||| |||||    
T  19724452 tttcgatgtctcggagctttaggcacttacgaatgggtagtgatgccttttggtctaaagaatgttggtgctacaaaccaaagagaaatgaatttaatgt 19724551  T
Q  412 ttcatgattttgttgataaatttatg 437  Q
    | ||||||||| ||||||||||||||    
T  19724552 tccatgattttattgataaatttatg 19724577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 463
Target Start/End: Complemental strand, 17807258 - 17806915
Alignment:
Q  121 aaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgatt 220  Q
    |||||||| | ||||||||| |||||||| ||||| ||  | |||   ||||| ||||| |||||||| ||||||||||||| ||| ||||| |||||||    
T  17807258 aaaaatgggactcttagagtctgtatagattttagggatttaaacttagctactccaaaagatgaataccctatgccagtggcagagatgcttgttgatt 17807159  T
Q  221 ctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaat-ttcatcgctgatgaagatgtgtctaaaacaacattttggtg 319  Q
    | ||| || | |||||||| || || ||||| ||| | |||||| | || |||||||| | ||| ||| | ||||| || ||||||||  | ||| | |     
T  17807158 cagcaccaggttttgaatatttaagcatgctagatggttattcttggtataatcaaatatacattgcttaagaagacgtatctaaaaccgcttttagata 17807059  T
Q  320 tccaggagatttaggcacgtacgaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttcatgat 419  Q
    |||||  | ||||||    || |||||| ||||||| ||||| ||  |||| |||| |||| ||   || ||||||| ||||||||| ||||||||||||    
T  17807058 tccagaggctttaggttgttatgaatggatagtaatgccttttggtctaaaaaatgttggtgcttgttatcaaagagcaatgaattctatgtttcatgat 17806959  T
Q  420 tttgttgataaatttatgcatatttacagtgatgatattgttgt 463  Q
    ||| | |  ||| ||||||| |||||||  ||||| ||||||||    
T  17806958 tttatagggaaagttatgcaaatttacatagatgacattgttgt 17806915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 485
Target Start/End: Complemental strand, 16164173 - 16164087
Alignment:
Q  399 atgaattcaatgtttcatgattttgttgataaatttatgcatatttacagtgatgatattgttgtaaattcttcgttggaagatgat 485  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||| |  ||||||||| | ||||| ||||||| | ||||||||    
T  16164173 atgaattcaatgtttcacgattttattgataaatttatgcaaatttagatggatgatattatggtaaaatcttcgtcgaaagatgat 16164087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 8990865 - 8990569
Alignment:
Q  19 atgtcgaagattaaagaggaaatcgaaagactccttagaagcaagtttattagaaccgcaaggcatattgagtggttagcaaacattgcttctgtaatta 118  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||| |||||| ||   || |  ||||| || |||| |  ||||||||    
T  8990865 atgtcgaagatcaaagaggaaatcgaaagactcctcaaaagcaagttaattagaactgcaaggtatga-gaatacttagctaatattgttcatgtaatta 8990767  T
Q  119 ttaaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttga 218  Q
      |||||||  | ||||||| |||||||||| ||||| ||  | || |||| |||||||||||||||||||| |||||||| || |||| ||||||||||    
T  8990766 agaaaaatgtgactcttagaatttgtatagattttagggaattaaataatgttacaccaaaggatgaatatcatatgccagcggcagaa-tgctagttga 8990668  T
Q  219 ttctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaatttc-atcgctgatgaagatgtgtctaaaacaacattttg 316  Q
    |||  ||  | |||||||||||||||||||| | ||| | || ||| |||| ||||||||||  || | |||  |||||||||| ||||||||||||||    
T  8990667 ttcaacattaggatttgaatacttgagtatgtttgatggttactctggttataatcaaatttttattgttgaacaagatgtgtcaaaaacaacattttg 8990569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 484
Target Start/End: Complemental strand, 268896 - 268595
Alignment:
Q  184 gaatatcctatgccagtggtagaaatgctagttgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaat-ttca 282  Q
    ||||||||||||||| ||| |||||||||| |||||| || ||||  ||||||||||||||||||||||||  |||||||  |||| |||||||| ||||    
T  268896 gaatatcctatgccaatggcagaaatgctacttgattatgtagcagcatttgaatacttgagtatgctcgacggctattccggttataatcaaatcttca 268797  T
Q  283 tcgctgatgaagatgtgtctaaaacaacattttggtgtccaggagatttaggcacgtacgaatgggtagtaattcctttcggcttaaagaatgctggttc 382  Q
    | | ||| ||||   |||| ||||   |||||   || ||| ||| ||||||    || |||| ||||||||| ||||| ||  ||||||||| |||| |    
T  268796 ttgttgaagaaggcatgtcaaaaatggcatttcaatgcccatgagctttaggttattatgaattggtagtaatgccttttggtctaaagaatgttggtgc 268697  T
Q  383 tacataccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcatatttacagtgatgatattgttgtaaattcttcgttggaagat 482  Q
    |||||||||||||| ||||||||||||||| |||| |||  ||| ||||||||||||  | |||  ||||| |||||| ||||| | ||| | |||||||    
T  268696 tacataccaaagagcaatgaattcaatgttccatgttttcattggtaaatttatgcaagtctacgttgatgttattgtggtaaaattttcatcggaagat 268597  T
Q  483 ga 484  Q
    ||    
T  268596 ga 268595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 14139385 - 14139492
Alignment:
Q  121 aaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgatt 220  Q
    |||||||| | ||||||||||||||| || ||||||||| | ||| | ||||| || |||||||| ||||||||| |||||||||||||||| || ||||    
T  14139385 aaaaatgggactcttagagtttgtattgattttagagacttaaaccaagctactcctaaggatgattatcctatgtcagtggtagaaatgcttgtcgatt 14139484  T
Q  221 ctgcagca 228  Q
    | ||||||    
T  14139485 cagcagca 14139492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 14140197 - 14140304
Alignment:
Q  121 aaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgatt 220  Q
    |||||||| | ||||||||||||||| || ||||||||| | ||| | ||||| || |||||||| |||||||||  ||||||||||||||| || ||||    
T  14140197 aaaaatgggactcttagagtttgtattgattttagagacttaaaccaagctactcctaaggatgattatcctatgttagtggtagaaatgcttgtcgatt 14140296  T
Q  221 ctgcagca 228  Q
    | ||||||    
T  14140297 cagcagca 14140304  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 12813800 - 12813937
Alignment:
Q  138 agtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgattctgcagcatgatttgaa 237  Q
    |||||||||||||||||||||  | ||||| || ||||||||||||||||  |  ||||| |||| ||||||||| || |||||||||||| |||| |||    
T  12813800 agtttgtatagactttagagatttaaacaaggcgacaccaaaggatgaatgccaaatgccggtggaagaaatgcttgtcgattctgcagcaagattcgaa 12813899  T
Q  238 tacttgagtatgctcgatagctattctagttacaatca 275  Q
    ||  |||||||||||||  |||| ||| | ||||||||    
T  12813900 tatctgagtatgctcgacggctactcttggtacaatca 12813937  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 14771066 - 14770972
Alignment:
Q  184 gaatatcctatgccagtggtagaaatgctagttgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaat 278  Q
    ||||| || ||||| || |||||||||||||| ||||| || ||  | ||||| |||||||||||||| ||| | |||||| |||| ||||||||    
T  14771066 gaatacccaatgcctgtagtagaaatgctagtagattcagcggcgggttttgattacttgagtatgctagatggatattctggttataatcaaat 14770972  T

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Target: scaffold0093 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 226
Target Start/End: Complemental strand, 49476 - 49371
Alignment:
Q  121 aaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgatt 220  Q
    |||||||  ||||| ||||| ||||| || ||||||||| |||||   ||||| || ||||||||||| ||||||||||||| |||||||||||| ||||    
T  49476 aaaaatgagattctcagagtctgtatggattttagagacttgaacttagctactcctaaggatgaataccctatgccagtggcagaaatgctagtcgatt 49377  T
Q  221 ctgcag 226  Q
    | ||||    
T  49376 cagcag 49371  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 26866389 - 26866293
Alignment:
Q  130 attcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgattctgcag 226  Q
    ||||| ||||| ||||| || ||||||||| |||||   ||||| || ||||||||||| ||||||||||||| |||||||||||| ||||| ||||    
T  26866389 attctcagagtctgtatggattttagagacttgaacttagctactcctaaggatgaataccctatgccagtggcagaaatgctagtcgattcagcag 26866293  T

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Target: scaffold0107 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 472
Target Start/End: Original strand, 5990 - 6120
Alignment:
Q  342 gaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcata 441  Q
    |||||| ||||||| || || ||  |||| ||||||||| |||| ||||| ||||  ||||||| |||||||||||||||  | ||  | |||||||| |    
T  5990 gaatggctagtaatgccatttggtctaaaaaatgctggtgctacgtaccagagagcgatgaatttaatgtttcatgatttcatagaggactttatgcaaa 6089  T
Q  442 tttacagtgatgatattgttgtaaattcttc 472  Q
    |||||| |||||||||||| ||||| |||||    
T  6090 tttacattgatgatattgtggtaaaatcttc 6120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 463
Target Start/End: Complemental strand, 25114705 - 25114362
Alignment:
Q  121 aaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgatt 220  Q
    |||||||| | ||||||||| | |||||| ||||||||| |||||   ||||| ||||| |||||||| ||||| ||||||| ||||||||| |||||||    
T  25114705 aaaaatgggactcttagagtctatatagattttagagacttgaacttagctaccccaaaagatgaataccctattccagtggcagaaatgcttgttgatt 25114606  T
Q  221 ctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaattt-catcgctgatgaagatgtgtctaaaacaacattttggtg 319  Q
    || || ||||   |||||| || ||  || | ||| |||||||| | ||||||||| | | ||| | ||| |||||  | ||||| ||  | ||| | |     
T  25114605 ctacaacatgccatgaatatttaagcttgttagatggctattctgggtacaatcaagtatacattgttgaagaagacatttctaagactgcttttagata 25114506  T
Q  320 tccaggagatttaggcacgtacgaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttcatgat 419  Q
    |||||| | ||| ||    || |||||| |||| || ||||| ||  |||| |||||| || ||   || ||||||| ||||||||| ||||||||||||    
T  25114505 tccaggggctttgggttgttatgaatggatagttatgccttttggtctaaaaaatgctagtgcttgctatcaaagagcaatgaattctatgtttcatgat 25114406  T
Q  420 tttgttgataaatttatgcatatttacagtgatgatattgttgt 463  Q
    ||| | |  ||||||||||| |||||||  ||||| ||||||||    
T  25114405 tttatagggaaatttatgcaaatttacatagatgacattgttgt 25114362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 24915583 - 24915668
Alignment:
Q  387 taccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcatatttacagtgatgatattgttgtaaattcttc 472  Q
    ||||||||||  ||||||| |||||||||||||||  | ||  | |||||||| ||||||| |||||||||||| ||||| |||||    
T  24915583 taccaaagagcgatgaatttaatgtttcatgatttcatagaggattttatgcaaatttacattgatgatattgtggtaaaatcttc 24915668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 23812299 - 23812263
Alignment:
Q  382 ctacataccaaagagtaatgaattcaatgtttcatga 418  Q
    ||||||||||||||||||||||||| |||||||||||    
T  23812299 ctacataccaaagagtaatgaattcgatgtttcatga 23812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0656 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0656
Description:

Target: scaffold0656; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 472
Target Start/End: Original strand, 6896 - 7026
Alignment:
Q  342 gaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcata 441  Q
    |||||| |||| || ||||| ||  |||| |||| |||| |||| ||||| ||||  ||||||| |||||||||||||||  | ||  | |||||||| |    
T  6896 gaatggctagtgatgccttttggtctaaaaaatgatggtgctacgtaccagagagcgatgaatttaatgtttcatgatttcatagaggattttatgcaaa 6995  T
Q  442 tttacagtgatgatattgttgtaaattcttc 472  Q
    |||||| |||||||||||| ||||| |||||    
T  6996 tttacattgatgatattgtggtaaaatcttc 7026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 5324 - 5378
Alignment:
Q  197 cagtggtagaaatgctagttgattctgcagcatgatttgaatacttgagtatgct 251  Q
    |||||| ||||||| |||||||||| ||||||||||||||||| || ||||||||    
T  5324 cagtggcagaaatgttagttgattcagcagcatgatttgaatatttaagtatgct 5378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 472
Target Start/End: Original strand, 92916 - 93046
Alignment:
Q  342 gaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcata 441  Q
    |||||| ||||||| || || ||  |||| ||||||||| |||||||||| ||||  ||||||| |||||||||||||||  |  |  | |||||||| |    
T  92916 gaatggctagtaatgccatttggtctaaaaaatgctggtgctacataccagagagcgatgaatttaatgtttcatgatttcatataagattttatgcaaa 93015  T
Q  442 tttacagtgatgatattgttgtaaattcttc 472  Q
    |||| | |||||||||||| ||||| |||||    
T  93016 tttatattgatgatattgtggtaaaatcttc 93046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 472
Target Start/End: Original strand, 22069606 - 22069736
Alignment:
Q  342 gaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcata 441  Q
    |||||| ||||||| || || ||  |||| ||||||||| |||| ||||| ||||  ||||||| |||||||||||||||  | ||  | |||||||| |    
T  22069606 gaatggttagtaatgccatttggtctaaaaaatgctggtgctacgtaccagagagcgatgaatttaatgtttcatgatttcatagaagattttatgcaaa 22069705  T
Q  442 tttacagtgatgatattgttgtaaattcttc 472  Q
    |||| | |||||||||||| ||||| |||||    
T  22069706 tttatattgatgatattgtggtaaaatcttc 22069736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 472
Target Start/End: Original strand, 21295805 - 21295935
Alignment:
Q  342 gaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcata 441  Q
    |||||| ||||||| || || ||  |||| |||| |||| |||| ||||| ||||  ||||||||||||||||||||||| || ||    |||||||| |    
T  21295805 gaatggttagtaatgccatttggtctaaaaaatgatggtgctacgtaccagagagcgatgaattcaatgtttcatgatttcgtagaagcttttatgcaaa 21295904  T
Q  442 tttacagtgatgatattgttgtaaattcttc 472  Q
    |||| | |||||||||||| ||||| |||||    
T  21295905 tttatattgatgatattgtggtaaaatcttc 21295935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 466
Target Start/End: Complemental strand, 40806 - 40481
Alignment:
Q  142 tgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgattctgcagcatgatttgaatact 241  Q
    |||||||||||||||||  ||||    ||||| || || || ||||| || ||||| |||| |||||||||||| ||||| ||  |  | || |||||||    
T  40806 tgtatagactttagagatttgaatctcgctacccctaaagacgaatacccaatgcctgtggcagaaatgctagtagattcagcgacgggtttcgaatact 40707  T
Q  242 tgagtatgctcgatagctattctagttacaatcaaat-ttcatcgctgatgaagatgtgtctaaaacaacattttggtgtccaggagatttaggcacgta 340  Q
    |||||||||| ||| |||||||  |||| |||||||| ||||| ||||| |||||  |  |||| ||  ||||||| || || || |  |||||    ||    
T  40706 tgagtatgctagatggctattcaggttataatcaaatcttcattgctgaagaagacatcgctaagaccgcattttgatgcccgggggcattaggatgcta 40607  T
Q  341 cgaatgggtagtaattcctttcggcttaaagaatgctggttctacataccaaagagtaatgaattcaatgtttcatgattttgttgataaatttatgcat 440  Q
     |||||| |||||||  | || ||  |||| |||||||||  ||| ||||||||||| ||||||  |||||||||||||||  | ||  | ||||||||     
T  40606 tgaatggttagtaatggcatttggtctaaaaaatgctggtgatacgtaccaaagagtgatgaatctaatgtttcatgatttcatagaagattttatgcaa 40507  T
Q  441 atttacagtgatgatattgttgtaaa 466  Q
    ||||| | |||||||||||| |||||    
T  40506 atttatattgatgatattgtggtaaa 40481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 5400 - 5500
Alignment:
Q  121 aaaaatggaattcttagagtttgtatagactttagagacctgaacaatgctacaccaaaggatgaatatcctatgccagtggtagaaatgctagttgatt 220  Q
    |||||||| | |||||||||||||||||| ||||| ||| | ||  | ||||| |  ||||||||||||||||| ||| ||| ||||||||| || ||||    
T  5400 aaaaatgggactcttagagtttgtatagattttagggacttaaatcaagctactcataaggatgaatatcctattccaatggcagaaatgcttgtcgatt 5499  T
Q  221 c 221  Q
    |    
T  5500 c 5500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 150605 - 150700
Alignment:
Q  183 tgaatatcctatgccagtggtagaaatgctagttgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaat 278  Q
    |||||| || ||||| |||| |||||||||||||||||| || ||  | || || |||||||||||||| ||  ||||||| || |||||||||||    
T  150605 tgaatacccaatgcctgtggcagaaatgctagttgattcagcggcgggtttcgagtacttgagtatgctagacggctattcaaggtacaatcaaat 150700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 68664 - 68758
Alignment:
Q  184 gaatatcctatgccagtggtagaaatgctagttgattctgcagcatgatttgaatacttgagtatgctcgatagctattctagttacaatcaaat 278  Q
    ||||| || ||||| || |||||||||||||| ||||| || ||  | ||||| |||||||||||||| ||| | |||||| |||| ||||||||    
T  68664 gaatacccaatgcctgtagtagaaatgctagtagattcagcggcgggttttgattacttgagtatgctagatggatattctggttataatcaaat 68758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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