View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11131_low_10 (Length: 394)

Name: NF11131_low_10
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11131_low_10
NF11131_low_10
[»] chr5 (3 HSPs)
chr5 (1-387)||(7236809-7237195)
chr5 (1-128)||(41715074-41715200)
chr5 (14-128)||(38755668-38755779)
[»] chr4 (4 HSPs)
chr4 (192-387)||(49591019-49591214)
chr4 (5-129)||(865244-865368)
chr4 (68-126)||(3284107-3284165)
chr4 (1-32)||(9838610-9838641)
[»] chr8 (5 HSPs)
chr8 (1-145)||(14958046-14958190)
chr8 (68-147)||(9293212-9293291)
chr8 (16-120)||(15292567-15292670)
chr8 (16-120)||(15472936-15473039)
chr8 (12-64)||(42501015-42501067)
[»] chr6 (4 HSPs)
chr6 (1-138)||(33908569-33908699)
chr6 (4-126)||(1415544-1415666)
chr6 (44-125)||(9627145-9627226)
chr6 (51-128)||(12155394-12155469)
[»] chr3 (5 HSPs)
chr3 (13-126)||(8543073-8543187)
chr3 (10-122)||(11630060-11630172)
chr3 (53-126)||(8541441-8541515)
chr3 (4-95)||(43361642-43361733)
chr3 (5-42)||(35223400-35223437)
[»] scaffold0035 (1 HSPs)
scaffold0035 (3-127)||(24445-24568)
[»] chr1 (5 HSPs)
chr1 (4-128)||(7440866-7440990)
chr1 (1-125)||(6397661-6397784)
chr1 (73-128)||(28666876-28666931)
chr1 (17-146)||(30848988-30849115)
chr1 (80-128)||(41941198-41941246)
[»] chr2 (4 HSPs)
chr2 (51-128)||(38288441-38288518)
chr2 (1-128)||(31395158-31395282)
chr2 (59-120)||(13486134-13486194)
chr2 (10-96)||(15358849-15358935)
[»] chr7 (2 HSPs)
chr7 (4-105)||(43814344-43814447)
chr7 (82-128)||(15077110-15077156)
[»] scaffold0027 (1 HSPs)
scaffold0027 (51-148)||(43596-43693)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 7237195 - 7236809
Alignment:
Q  1 cagtaataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctt 100  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7237195 cagtaataaaaatggaattatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctt 7237096  T
Q  101 tcgttctcttatttaatcttttgttactggttactgttttaacaaagattatgtttcatgttttcaattttcattacaaaactaccatatttagatccaa 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7237095 tcgttctcttatttaatcttttgttactggttactgttctaacagagattatgtttcatgttttcaattttcattacaaaactaccatatttagatccaa 7236996  T
Q  201 aaaatgcatacctgaggaaccgcaggatacaatcttagtgtctcagttatgactgcatgcaaataatgcaacttctctagtgaatctttattcaataact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7236995 aaaatgcatacctgaggaaccgcaggatacaatcttagtgtctcagttatgactgcatgcaaataatgcaacttctctagtgaatctttattcaataact 7236896  T
Q  301 ttgaaaattgtacaactctttgattgaataatttagggtcatctttatcatcatactgaggcaaggtaacattctcttcctttgctt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7236895 ttgaaaattgtacaactctttgattgaataatttagggtcatctttatcatcatactgaggcaaggtaacattctcttcctttgctt 7236809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41715074 - 41715200
Alignment:
Q  1 cagtaataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctt 100  Q
    |||||||| |||||||||||||| |||||||| | || |||||||| || ||||| |||||||||  ||||||  ||||| |||| ||||||||| ||||    
T  41715074 cagtaatagaaacggaactatagatgctctatcgtcgtagaggtaggcacaattgtccgaactgcattaacaag-atcgtatgttaattgtctttctctt 41715172  T
Q  101 tcgttctcttatttaatcttttgttact 128  Q
    ||||||||||||||||||||||||||||    
T  41715173 tcgttctcttatttaatcttttgttact 41715200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 38755668 - 38755779
Alignment:
Q  14 ggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatt 113  Q
    ||||||||| ||  ||||||  ||||||||||| || ||||| || |||||   |||||||||| ||||||||||   |||| |||||||||||||||||    
T  38755668 ggaactataactattctataatcgcagaggtaggcacaattgaccaaactgtattaacaaatatggtgtgttcat---ctttctctttcgttctcttatt 38755764  T
Q  114 taatcttttgttact 128  Q
    |||||||||||||||    
T  38755765 taatcttttgttact 38755779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 192 - 387
Target Start/End: Original strand, 49591019 - 49591214
Alignment:
Q  192 tagatccaaaaaatgcatacctgaggaaccgcaggatacaatcttagtgtctcagttatgactgcatgcaaataatgcaacttctctagtgaatctttat 291  Q
    |||| |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49591019 tagacccaaaaaatgcatacctgaggaactgccggatacaatcttagagtctcagttatgactgcatgcaaataatgcaacttctctagtgaatctttat 49591118  T
Q  292 tcaataactttgaaaattgtacaactctttgattgaataatttagggtcatctttatcatcatactgaggcaaggtaacattctcttcctttgctt 387  Q
    |||||||||||||||||||||| || ||||||||||| |||| | ||||||||||||||||| | |||||||| ||||||||||||||||||||||    
T  49591119 tcaataactttgaaaattgtactaccctttgattgaacaattcaaggtcatctttatcatcacattgaggcaatgtaacattctcttcctttgctt 49591214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 865368 - 865244
Alignment:
Q  5 aataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgt 104  Q
    |||| |||||||| ||||||| |||||||| || |||| || ||| |||||  |||||  || ||||||||||||||| |||||| |||||| |||||||    
T  865368 aatagaaacggaattatagctactctatagtcgtagagataaacacaattgatcgaaccacgttaacaaatatcgtgttttcattttcttttactttcgt 865269  T
Q  105 tctcttatttaatcttttgttactg 129  Q
    ||||||||||||| |||||||||||    
T  865268 tctcttatttaattttttgttactg 865244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 3284165 - 3284107
Alignment:
Q  68 taacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgtta 126  Q
    ||||||||||||| ||||||||||||||| |||||| ||| |||||||||||| |||||    
T  3284165 taacaaatatcgtatgttcattgtcttttactttcggtcttttatttaatcttatgtta 3284107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9838610 - 9838641
Alignment:
Q  1 cagtaataaaaacggaactatagctgctctat 32  Q
    ||||||||||||||||||||||||||||||||    
T  9838610 cagtaataaaaacggaactatagctgctctat 9838641  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 14958046 - 14958190
Alignment:
Q  1 cagtaataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctt 100  Q
    |||||||| ||||  ||||||||||||||||||  ||||||||||| || |||||||||||||| | ||||||||||| | |||||||||||||  ||||    
T  14958046 cagtaatagaaacataactatagctgctctataatcgcagaggtaggcacaattggccgaactgtgttaacaaatatcctatgttcattgtcttcctctt 14958145  T
Q  101 tcgttctcttatttaatcttttgttactggttactgttttaacaa 145  Q
    |||||||||| ||||||||||||||||| |||  |||| ||||||    
T  14958146 tcgttctcttgtttaatcttttgttactagttgttgttctaacaa 14958190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 9293291 - 9293212
Alignment:
Q  68 taacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttactggttactgttttaacaaag 147  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||  |||| ||||||||    
T  9293291 taacaaatattgtgtgttcattgtctttctcttttgttctcttatttaatcttttgttaccggttgatgttctaacaaag 9293212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 15292670 - 15292567
Alignment:
Q  16 aactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttattta 115  Q
    |||||||| |||| ||||| || |||| ||| || |||||| ||||||||| |||||| |||||||||||||||  ||||| ||||||||||||||||||    
T  15292670 aactatagttgctttatagtcgtagagataggcacaattggtcgaactgcgttaacaa-tatcgtgtgttcattaacttttactttcgttctcttattta 15292572  T
Q  116 atctt 120  Q
    |||||    
T  15292571 atctt 15292567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 15473039 - 15472936
Alignment:
Q  16 aactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttattta 115  Q
    |||||||| |||| ||||| || |||| ||| || |||||| ||||||||| |||||| |||||||||||||||  ||||| ||||||||||||||||||    
T  15473039 aactatagttgctttatagtcgtagagataggcacaattggtcgaactgcgttaacaa-tatcgtgtgttcattaacttttactttcgttctcttattta 15472941  T
Q  116 atctt 120  Q
    |||||    
T  15472940 atctt 15472936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 42501015 - 42501067
Alignment:
Q  12 acggaactatagctgctctatagccgcagaggtagacaaaattggccgaactg 64  Q
    |||||||||||||  |||||| || | ||||||||||| ||||||||||||||    
T  42501015 acggaactatagcaactctatggctgtagaggtagacacaattggccgaactg 42501067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 33908699 - 33908569
Alignment:
Q  1 cagtaataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctt 100  Q
    |||||||| ||||||||||||||| |||||||||       ||||| || |||||| ||||||||| ||||||||||| |||||||||||||||| ||||    
T  33908699 cagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcgaactgcgttaacaaatatcatgtgttcattgtctttctctt 33908607  T
Q  101 tcgttctcttatttaatcttttgttactggttactgtt 138  Q
    ||||||||||||||||| |||||||||| ||| |||||    
T  33908606 tcgttctcttatttaatattttgttactagttgctgtt 33908569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 1415544 - 1415666
Alignment:
Q  4 taataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttt-tctttc 102  Q
    ||||| |||| |||||||||||||||||||  || |||||||| || |||||||||||||||| |||||| |||||||| || |||||||||| ||||||    
T  1415544 taatagaaacagaactatagctgctctataatcgtagaggtagccacaattggccgaactgcgttaacaagtatcgtgtatttattgtcttttctctttc 1415643  T
Q  103 gttctcttatttaatcttttgtta 126  Q
    ||||||||| ||||||||||||||    
T  1415644 gttctctta-ttaatcttttgtta 1415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 9627226 - 9627145
Alignment:
Q  44 tagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgtt 125  Q
    |||||| ||||||| |||||| | ||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||    
T  9627226 tagacacaattggctgaactgggttaacaaatatcatgtgttcattgtgtttctctttcattctcttatttaatcttttgtt 9627145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 12155469 - 12155394
Alignment:
Q  51 aattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttact 128  Q
    |||| ||||||||| | ||| |||||| ||||||||||||||||| |||||||||||||||  |||| ||||||||||    
T  12155469 aatttgccgaactgtgttaaaaaatattgtgtgttcattgtctttctctttcgttctctta--taattttttgttact 12155394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 8543073 - 8543187
Alignment:
Q  13 cggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtcttt-ttctttcgttctctta 111  Q
    ||||||||||| || ||||||| | | ||||||| || |||||||||||||||| ||||||||||||| |||||||||||||| ||  ||||||||||||    
T  8543073 cggaactatagttgttctatagtcaccgaggtaggcacaattggccgaactgcgttaacaaatatcgtatgttcattgtctttctttcttcgttctctta 8543172  T
Q  112 tttaatcttttgtta 126  Q
    |||||||||||||||    
T  8543173 tttaatcttttgtta 8543187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 11630060 - 11630172
Alignment:
Q  10 aaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctct 109  Q
    |||||||||||||  |||| ||||| || ||| |||  || |||||||| ||||| | ||||||||||||| || ||||||||||||||||| |||||||    
T  11630060 aaacggaactataattgctttatagtcgtagatgtatgcacaattggccaaactgtgttaacaaatatcgtatgatcattgtctttttcttttgttctct 11630159  T
Q  110 tatttaatctttt 122  Q
    |||||||||||||    
T  11630160 tatttaatctttt 11630172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 8541441 - 8541515
Alignment:
Q  53 ttggccgaactgcggtaacaaatatcgtgtgttcattgtctttttct-ttcgttctcttatttaatcttttgtta 126  Q
    |||||||||||||| ||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||    
T  8541441 ttggccgaactgcgttaacaaatatcgtgtgtgcgttgtctttctctcttcgttctcttatttaatcttttgtta 8541515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 43361642 - 43361733
Alignment:
Q  4 taataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtcttt 95  Q
    ||||| ||||| ||||| | ||||| |||||  ||||||||||| |  ||||||| |||| || ||||||||||| ||||||||||||||||    
T  43361642 taatacaaacgaaactaaaactgctgtatagttgcagaggtagatatcattggccaaactacgttaacaaatatcatgtgttcattgtcttt 43361733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 35223437 - 35223400
Alignment:
Q  5 aataaaaacggaactatagctgctctatagccgcagag 42  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  35223437 aatataaacggaactatagctgctctatagtcgcagag 35223400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 24445 - 24568
Alignment:
Q  3 gtaataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttc 102  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||| || |||||||||||   |  |||| || ||||||| ||||||||||||| ||||     
T  24445 gtaatagaaacggaactacagctgctctatagtcgcagaggtaggcataattggccgaataactttaac-aagatcgtgttttcattgtcttttactttt 24543  T
Q  103 gttctcttatttaatcttttgttac 127  Q
    |||||||||||||||||| ||||||    
T  24544 gttctcttatttaatcttctgttac 24568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 7440866 - 7440990
Alignment:
Q  4 taataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcg 103  Q
    ||||||||||  ||||||| | ||||||||| |||||| ||| | | |||||||||||||||| ||||||||||||| | |  ||||| |||| ||||||    
T  7440866 taataaaaacaaaactataaccgctctatagtcgcagaagtaaatataattggccgaactgcgttaacaaatatcgtatatatattgttttttactttcg 7440965  T
Q  104 ttctcttatttaatcttttgttact 128  Q
    ||||||||||||||||| |||||||    
T  7440966 ttctcttatttaatcttatgttact 7440990  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 6397784 - 6397661
Alignment:
Q  1 cagtaataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctt 100  Q
    |||||||| ||||  ||||||||||||||||||| | ||||||||| || ||| ||||||| |||| |||||||||| || ||||| |||| |||| |||    
T  6397784 cagtaatagaaacaaaactatagctgctctatagtcacagaggtaggcacaat-ggccgaagtgcgttaacaaatattgtatgttcgttgtgttttactt 6397686  T
Q  101 tcgttctcttatttaatcttttgtt 125  Q
    | |||||||||||||||||| ||||    
T  6397685 tggttctcttatttaatcttatgtt 6397661  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 28666876 - 28666931
Alignment:
Q  73 aatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttact 128  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  28666876 aatatcgtgcgttcattgtctttctctttcgttctcttatttaatcttttgttact 28666931  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 30848988 - 30849115
Alignment:
Q  17 actatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaa 116  Q
    ||||||| |||||||||  ||||||||||| ||  ||||||  |||||   ||||||| || ||||||||||||||||||  ||| ||| ||||| ||||    
T  30848988 actatagttgctctataatcgcagaggtaggcaccattggctaaactgttttaacaaagatagtgtgttcattgtcttttattttagtt-tctta-ttaa 30849085  T
Q  117 tcttttgttactggttactgttttaacaaa 146  Q
    ||||||||||| ||||  |||| |||||||    
T  30849086 tcttttgttaccggtttttgttctaacaaa 30849115  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 41941198 - 41941246
Alignment:
Q  80 tgtgttcattgtctttttctttcgttctcttatttaatcttttgttact 128  Q
    |||||||||| ||||||  ||| |||||||||||||||||| |||||||    
T  41941198 tgtgttcattatcttttatttttgttctcttatttaatcttctgttact 41941246  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 38288518 - 38288441
Alignment:
Q  51 aattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttact 128  Q
    ||||||||||||| || ||||||||||| |||||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  38288518 aattggccgaactacgttaacaaatatcatgtgttaattgtctttctctttcaatctcttatttaatcttttgttact 38288441  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 31395282 - 31395158
Alignment:
Q  1 cagtaataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctt 100  Q
    |||||||| |||||||| |||||||||| |||||||  |||  ||  ||  ||||| ||| ||| | ||||||||||| ||||||||||||||||| |||    
T  31395282 cagtaatataaacggaattatagctgctttatagccataga--taagcaccattggacgagctgtgttaacaaatatcatgtgttcattgtcttttactt 31395185  T
Q  101 tcgttctcttatttaatcttttgttact 128  Q
    ||||| |||||||| || ||||||||||    
T  31395184 tcgttttcttattt-atattttgttact 31395158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 13486194 - 13486134
Alignment:
Q  59 gaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatctt 120  Q
    |||||| | ||| |||||| || |||||||||| ||||||||||||||||||||||||||||    
T  13486194 gaactgtgttaaaaaatattgtatgttcattgt-tttttctttcgttctcttatttaatctt 13486134  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 15358935 - 15358849
Alignment:
Q  10 aaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttt 96  Q
    ||||||||| |||| || ||||||| ||||||||||| ||  ||| | | ||||||| ||||||| ||| ||||||||||| |||||    
T  15358935 aaacggaacaatagttgttctatagtcgcagaggtaggcatcattagtcaaactgcgttaacaaagatcttgtgttcattgcctttt 15358849  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 43814447 - 43814344
Alignment:
Q  4 taataaaaacggaactatagctgctctatagccgcagaggtagacaaaattggccgaactgcggtaacaaatatcg--tgtgttcattgtctttttcttt 101  Q
    ||||| ||||||||||||| || |||||||| ||||||||||| || || |||||||||| || ||| ||| ||||  ||||| ||||||||||| ||||    
T  43814447 taatacaaacggaactataacttctctatagtcgcagaggtaggcacaactggccgaactacgttaaaaaagatcgattgtgtccattgtcttttacttt 43814348  T
Q  102 cgtt 105  Q
    ||||    
T  43814347 cgtt 43814344  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 15077156 - 15077110
Alignment:
Q  82 tgttcattgtctttttctttcgttctcttatttaatcttttgttact 128  Q
    |||||||||| |||| |||||||||||||||||||||| ||||||||    
T  15077156 tgttcattgttttttactttcgttctcttatttaatctgttgttact 15077110  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 43693 - 43596
Alignment:
Q  51 aattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttactggttactgttttaacaaaga 148  Q
    ||||||||||| |||  ||||||||||  |||||| ||| ||||| ||||| |||||||||||||||| |||  |||| ||| ||| | |||||||||    
T  43693 aattggccgaattgcattaacaaatattatgtgtttattatctttctcttttgttctcttatttaatcattttatactagttgctgctctaacaaaga 43596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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