View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11131_low_11 (Length: 393)

Name: NF11131_low_11
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11131_low_11
NF11131_low_11
[»] chr6 (7 HSPs)
chr6 (15-186)||(29364027-29364198)
chr6 (220-348)||(29362743-29362871)
chr6 (260-314)||(24270233-24270287)
chr6 (179-220)||(29362910-29362951)
chr6 (267-310)||(29351712-29351755)
chr6 (86-181)||(29353713-29353809)
chr6 (231-263)||(29915444-29915476)
[»] chr5 (2 HSPs)
chr5 (231-316)||(27753866-27753946)
chr5 (143-208)||(27754121-27754192)
[»] chr7 (1 HSPs)
chr7 (114-179)||(29358638-29358703)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 29364198 - 29364027
Alignment:
Q  15 atgaagtttgagtttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgaagagaaaattaccaagc 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29364198 atgaggtttgagtttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgatgagaaaattaccaagc 29364099  T
Q  115 aattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364098 aattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat 29364027  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 220 - 348
Target Start/End: Complemental strand, 29362871 - 29362743
Alignment:
Q  220 gtggttaatggacaataactctatgttcatgtgcctgcaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtatatag 319  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29362871 gtggttaatggacaataactctatgttcatgtgcctagaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtatatag 29362772  T
Q  320 aaaacatttttgcagcaagtatttgttta 348  Q
    |||||||||||||||||||||||||||||    
T  29362771 aaaacatttttgcagcaagtatttgttta 29362743  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 24270287 - 24270233
Alignment:
Q  260 catatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgta 314  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24270287 catatttatgtatagaatactatgcttttctatatatttgcagcacatttgtgta 24270233  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 29362951 - 29362910
Alignment:
Q  179 ttgatgattcagtaataacgaatctcttagttctatgagttg 220  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  29362951 ttgatgattcagtaataacgaatctctaagttctatgagttg 29362910  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 29351755 - 29351712
Alignment:
Q  267 atgtatagaatactatgcttttctgtatatttgcagcacatttg 310  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||    
T  29351755 atgtaaagaatactatgtttttctatatatttgcagcacatttg 29351712  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 29353809 - 29353713
Alignment:
Q  86 tatgtgtgttgaagagaaaattaccaagcaattgttgagaaagaaagttgattttttc--ggaaataagagagaaaaagttgaattctttttgttttg 181  Q
    |||||||||||| || | ||||||| || | |||||||| |||||||| ||||||||   ||||| | |||||||||||| |||||||||| ||||||    
T  29353809 tatgtgtgttgatgatataattacctagtagttgttgaggaagaaagtcgatttttttttggaaa-aggagagaaaaagtcgaattcttttcgttttg 29353713  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 29915444 - 29915476
Alignment:
Q  231 acaataactctatgttcatgtgcctgcaacata 263  Q
    |||||||||||||||||||||||||| ||||||    
T  29915444 acaataactctatgttcatgtgcctgtaacata 29915476  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 27753946 - 27753866
Alignment:
Q  231 acaataactctatgttcatgtgcctgcaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtata 316  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||     |||| ||||||||||||| |||||||||||    
T  27753946 acaataactctatgttcatgtgcctacaacatatttatgtatagaatacta-----ttctttatatttgcagcatatttgtgtata 27753866  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 27754192 - 27754121
Alignment:
Q  143 cggaaataagagagaaaaagttgaattctttttgtttt------gatgattcagtaataacgaatctcttag 208  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||| |||||| |||||||||||    
T  27754192 cggaaataagagagaaaaagttgaattctttttgtttttgtttcgatgattcaataataatgaatctcttag 27754121  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 29358638 - 29358703
Alignment:
Q  114 caattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttt 179  Q
    |||||||||||| |||||||| | ||||| ||||| | |||||| |||||||||||||||||||||    
T  29358638 caattgttgagagagaaagtttagttttttggaaaaaggagagagaaagttgaattctttttgttt 29358703  T

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