View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_12 (Length: 383)
Name: NF11131_low_12
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 5957686 - 5958048
Alignment:
| Q |
1 |
tctacctacggtgcgtgtgcacgagtttccaatggacccagatatatacaccgaatggaagatgttacaatggaagccgccggagtttgcgcgagcacct |
100 |
Q |
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| T |
5957686 |
tctacctacggtgcgtgtgcaggagtttccaatggacccagatatatacacagaatggaagatgttacaatggaagccgccggagtttgcgcgagcacct |
5957785 |
T |
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| Q |
101 |
ggtgggccaccgtcgaatgtggcggtggcccatgtcaggcttggcggacgggcggctttgttggggaaagttggggaggatgagtttggggaggagattg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5957786 |
ggtgggccgccgtcgaatgtggcggtggcccatgtcaggcttggcggacgggcggctttgttggggaaagttggggaggatgagtttggggaggagattg |
5957885 |
T |
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| Q |
201 |
ttttggggatgaataaggagaaggtgcagactagaggggtgaagtttgattcggggtttcggactgggtgtagttatatgaaggtgaagtttgatgatga |
300 |
Q |
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| T |
5957886 |
ttttggggatgaataaggagaaggtgcagactagaggggtgaagtttgattcggggtttcggactgggtgtagttatatgaaggtgaagtttgatgatga |
5957985 |
T |
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| Q |
301 |
tgggaagatggggatggagattgttaaggaatgtgctgaggattctcttaggagtgatgaatt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5957986 |
tgggaagatggggatggagattgttaaggaatgtgctgaggattctcttaggagtgatgaatt |
5958048 |
T |
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