View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_15 (Length: 322)
Name: NF11131_low_15
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 43 - 310
Target Start/End: Original strand, 2920675 - 2920942
Alignment:
| Q |
43 |
aatcagcataaatatatagaaagccaagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcag |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2920675 |
aatcagcataaatatatagaaagccaagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaacaaagcag |
2920774 |
T |
|
| Q |
143 |
tggcacggaacaagtagaaaataagcacatataaacaagaagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2920775 |
tggcacggaacaagtagaaaataagcacatataaacaagaagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctg |
2920874 |
T |
|
| Q |
243 |
caccaacaataacgctccagctaccacaacacagaaaggcagattcaaaaagaaagccacgttcatct |
310 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2920875 |
caccaacaataacgctccagctacaacaacacagaaaggcagattcaaaaagaaagccacgttcatct |
2920942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 89 - 310
Target Start/End: Original strand, 18246330 - 18246552
Alignment:
| Q |
89 |
agctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtagaaaataagcacatataaacaag-aagggt |
187 |
Q |
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||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| | ||||| |
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| T |
18246330 |
agctagcagttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaatgaacaagtagaaaataagcacagatatacatggaagggc |
18246429 |
T |
|
| Q |
188 |
ggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctgcaccaacaataacgctccagctaccacaacacagaaaggcagatt |
287 |
Q |
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| T |
18246430 |
ggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctccagctacaacagcacaaaaaggcagatt |
18246529 |
T |
|
| Q |
288 |
caaaaagaaagccacgttcatct |
310 |
Q |
| |
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|||||||| |||| ||||||||| |
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| T |
18246530 |
caaaaagacagccgcgttcatct |
18246552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 54 - 310
Target Start/End: Complemental strand, 16989942 - 16989685
Alignment:
| Q |
54 |
atatatagaaagccaagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaac |
153 |
Q |
| |
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|||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |
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| T |
16989942 |
atatatagaaagccaagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctaccaaccttataaaacaagcagtggcaaggaac |
16989843 |
T |
|
| Q |
154 |
aagtagaaaataagcacatataaacaag-aagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctgcaccaacaat |
252 |
Q |
| |
|
|||||||||||||||||| ||| ||| | ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
16989842 |
aagtagaaaataagcacaaatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaat |
16989743 |
T |
|
| Q |
253 |
aacgctccagctaccacaacacagaaaggcagattcaaaaagaaagccacgttcatct |
310 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||||||||||| |||| ||||||||| |
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|
| T |
16989742 |
aacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatct |
16989685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 68 - 310
Target Start/End: Original strand, 1259056 - 1259299
Alignment:
| Q |
68 |
aagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtagaaaataag |
167 |
Q |
| |
|
|||||| ||||||||| || |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1259056 |
aagcaccggaagtgctaaaagagctagttgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
1259155 |
T |
|
| Q |
168 |
cacatataaacaag-aagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctgcaccaacaataacgctccagctac |
266 |
Q |
| |
|
|||| ||| ||| | ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
1259156 |
cacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctccagctac |
1259255 |
T |
|
| Q |
267 |
cacaacacagaaaggcagattcaaaaagaaagccacgttcatct |
310 |
Q |
| |
|
||| |||| ||||||||||||||||||| |||| |||||||| |
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| T |
1259256 |
aacagcacaaaaaggcagattcaaaaagacagccgtgttcatct |
1259299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 68 - 310
Target Start/End: Original strand, 37242344 - 37242587
Alignment:
| Q |
68 |
aagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtagaaaataag |
167 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37242344 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
37242443 |
T |
|
| Q |
168 |
cacatataaacaag-aagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctgcaccaacaataacgctccagctac |
266 |
Q |
| |
|
|||| ||| ||| | ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
37242444 |
cacagatatacatggaagggcggaaacaagccaaactccataaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctccagctac |
37242543 |
T |
|
| Q |
267 |
cacaacacagaaaggcagattcaaaaagaaagccacgttcatct |
310 |
Q |
| |
|
||| |||| ||||||||||||||||||| |||| |||||||| |
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| T |
37242544 |
aacagcacaaaaaggcagattcaaaaagacagccgtgttcatct |
37242587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 34873357 - 34873273
Alignment:
| Q |
68 |
aagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaa |
152 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
34873357 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaa |
34873273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 68 - 295
Target Start/End: Original strand, 31234507 - 31234736
Alignment:
| Q |
68 |
aagcacaggaagtgctctaaaagctagctgttacaaccaaacaacaggttcctgcctaccttataaaacaagcagtggcacggaacaagtagaaaataag |
167 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31234507 |
aagcaccggaagtgctaaaagagctagctgttacaaccaaacaaaaggttcctgccaaccttataaaacaagcagtggcaaggaacaagtagaaaataag |
31234606 |
T |
|
| Q |
168 |
cacatataaaca-agaagggtggaaacaaaccaaattcc-aaaaaagtaaatttacaaaatccctcccatagatctgcaccaacaataacgctccagcta |
265 |
Q |
| |
|
|||| ||| ||| |||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |
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|
| T |
31234607 |
cacagatatacatggaagggcggaaacaatccaaactccaaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaataacgctctagcta |
31234706 |
T |
|
| Q |
266 |
ccacaacacagaaaggcagattcaaaaaga |
295 |
Q |
| |
|
| ||| |||| ||||||||||||||||||| |
|
|
| T |
31234707 |
caacatcacaaaaaggcagattcaaaaaga |
31234736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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