View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11131_low_16 (Length: 311)

Name: NF11131_low_16
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11131_low_16
NF11131_low_16
[»] chr3 (15 HSPs)
chr3 (23-297)||(37066386-37066660)
chr3 (23-75)||(37065965-37066017)
chr3 (108-151)||(51925024-51925067)
chr3 (28-102)||(44908688-44908762)
chr3 (30-75)||(23310505-23310550)
chr3 (30-75)||(32982273-32982318)
chr3 (23-76)||(52341334-52341387)
chr3 (31-119)||(20385013-20385101)
chr3 (23-74)||(16674301-16674352)
chr3 (30-105)||(17343732-17343807)
chr3 (30-105)||(49679542-49679617)
chr3 (31-105)||(5742402-5742476)
chr3 (31-105)||(5779361-5779435)
chr3 (30-87)||(44266959-44267016)
chr3 (30-86)||(54515660-54515716)
[»] chr2 (9 HSPs)
chr2 (23-151)||(34238815-34238943)
chr2 (23-151)||(41527682-41527810)
chr2 (23-102)||(7697467-7697546)
chr2 (23-74)||(41320007-41320058)
chr2 (23-74)||(41320782-41320833)
chr2 (23-113)||(24983123-24983213)
chr2 (30-119)||(16155979-16156068)
chr2 (30-75)||(34239582-34239627)
chr2 (30-74)||(13545369-13545413)
[»] chr5 (11 HSPs)
chr5 (132-216)||(41608914-41608998)
chr5 (23-151)||(8469735-8469863)
chr5 (23-91)||(41608999-41609067)
chr5 (30-102)||(25109898-25109970)
chr5 (30-102)||(25168990-25169062)
chr5 (44-103)||(7209645-7209704)
chr5 (259-297)||(41608878-41608916)
chr5 (30-105)||(3389260-3389335)
chr5 (23-106)||(27100350-27100433)
chr5 (31-105)||(3636898-3636972)
chr5 (24-74)||(41608409-41608459)
[»] chr8 (6 HSPs)
chr8 (114-230)||(39322454-39322570)
chr8 (26-103)||(32319800-32319877)
chr8 (23-91)||(10296931-10296999)
chr8 (30-105)||(14396640-14396715)
chr8 (28-91)||(41826646-41826709)
chr8 (23-91)||(18607708-18607776)
[»] chr4 (8 HSPs)
chr4 (23-143)||(47370941-47371061)
chr4 (30-101)||(5064453-5064524)
chr4 (30-105)||(6944738-6944813)
chr4 (25-103)||(27109766-27109844)
chr4 (30-91)||(22339893-22339954)
chr4 (30-86)||(1953506-1953562)
chr4 (61-105)||(5044867-5044911)
chr4 (25-73)||(32527551-32527599)
[»] chr1 (15 HSPs)
chr1 (27-147)||(18121844-18121964)
chr1 (30-105)||(16519350-16519425)
chr1 (27-102)||(50277999-50278074)
chr1 (27-102)||(50289667-50289742)
chr1 (25-75)||(4968932-4968982)
chr1 (30-102)||(39773381-39773453)
chr1 (30-141)||(18122296-18122407)
chr1 (27-91)||(5496437-5496501)
chr1 (23-74)||(17238478-17238529)
chr1 (30-105)||(42023211-42023286)
chr1 (25-103)||(47966995-47967072)
chr1 (44-137)||(30661797-30661889)
chr1 (31-143)||(39870918-39871033)
chr1 (30-91)||(48481627-48481688)
chr1 (30-86)||(35575988-35576044)
[»] scaffold0119 (4 HSPs)
scaffold0119 (25-147)||(3303-3425)
scaffold0119 (25-147)||(15358-15480)
scaffold0119 (25-129)||(3775-3879)
scaffold0119 (25-129)||(15830-15934)
[»] chr6 (6 HSPs)
chr6 (25-147)||(26667368-26667490)
chr6 (25-129)||(26666914-26667018)
chr6 (25-103)||(2479979-2480057)
chr6 (30-103)||(13220788-13220861)
chr6 (24-105)||(33707575-33707656)
chr6 (30-103)||(35073488-35073561)
[»] chr7 (1 HSPs)
chr7 (23-91)||(32020222-32020290)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 37066660 - 37066386
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagta 122  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| || |||||||||||||||    
T  37066660 gaggagagatattttgacttcaagagtaagtctctaaacttactccaaatcttgatccttaatctcaatatcaattaatggttaggattgaataatagta 37066561  T
Q  123 attgttagggtgaggtttaattcttttctgcactgaaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacgacagacaacattaaact 222  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37066560 attgttagggtgaggtttaattcttttctgcactggaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacggcagacaacattaaact 37066461  T
Q  223 catgatcatcatcatagatataaaccttctccgtttcatgatttgaaaatttgatttcaaatcaaagtcatatgt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37066460 catgatcatcatcatagatataaaccttctccgtttcatgatttgaaaatttgatttcaaatcatagtcatatgt 37066386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 37065965 - 37066017
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatctt 75  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  37065965 gaggagggatattttgactccaagagtaagtctctaaacttactccaaatctt 37066017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 51925067 - 51925024
Alignment:
Q  108 gattgaataatagtaattgttagggtgaggtttaattcttttct 151  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  51925067 gattgaataataataattgttagggtgaggtttaattgttttct 51925024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 44908688 - 44908762
Alignment:
Q  28 gagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatg 102  Q
    ||||||||||| ||| |||||||||| | | ||||||||||||||| | | |||||||||||||||  |||||||    
T  44908688 gagatattttgactcaaagagtaagtgtgttaacttactccaaatcatgacctttaatttcaatattgattaatg 44908762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 23310505 - 23310550
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatctt 75  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||    
T  23310505 gatattttgactccaagagtaagtctatagacttactccaaatctt 23310550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 32982273 - 32982318
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatctt 75  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||    
T  32982273 gatattttgactccaagagtaagtctatagacttactccaaatctt 32982318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 52341334 - 52341387
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatctta 76  Q
    |||||||||||| ||| |||||||||||||||| || | |||||||||||||||    
T  52341334 gaggagagatatattgactccaagagtaagtctatacaattactccaaatctta 52341387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 20385101 - 20385013
Alignment:
Q  31 atattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataata 119  Q
    |||||||| || ||||||||||| | |  ||||||||||||||||| |||||||||  | | |||||||||||||  |||||| |||||    
T  20385101 atattttgacttcaagagtaagtttgttcacttactccaaatcttagtctttaattgtattttcaattaatggcttggattgattaata 20385013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 16674352 - 16674301
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatct 74  Q
    |||||||||||||||| ||| |||||||||| | || |||||||||||||||    
T  16674352 gaggagagatattttgactcaaagagtaagtttatagacttactccaaatct 16674301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 17343807 - 17343732
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||||||| |||||||||||||| |   | ||||||||||||||| | ||||||||| ||||| | |||||||||    
T  17343807 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattttaatattagttaatggct 17343732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 49679542 - 49679617
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||||||| || ||||||||||| |   ||||||||||||||||| |||||||||| |||| |  ||||||||||    
T  49679542 gatattttgacttcaagagtaagtgtaataacttactccaaatcttgatctttaattgcaattttgattaatggct 49679617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 5742476 - 5742402
Alignment:
Q  31 atattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    |||||||| ||||||||||||||     ||||||||||||||||| | ||||||||| |||||  ||||||||||    
T  5742476 atattttgactccaagagtaagtgcaataacttactccaaatcttgacctttaatttgaatattgattaatggct 5742402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 5779435 - 5779361
Alignment:
Q  31 atattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    |||||||| ||||||||||||||     ||||||||||||||||| | ||||||||| |||||  ||||||||||    
T  5779435 atattttgactccaagagtaagtgcaataacttactccaaatcttgacctttaatttgaatattgattaatggct 5779361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 44267016 - 44266959
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaattt 87  Q
    ||||||||| |||||||||||| | |   ||||||||||||||||| |||||||||||    
T  44267016 gatattttgactccaagagtaaatgtaataacttactccaaatcttgatctttaattt 44266959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 54515716 - 54515660
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatt 86  Q
    ||||||||| |||||||||||||| |   | ||||||||||||||||| ||||||||    
T  54515716 gatattttgactccaagagtaagtgtaatatcttactccaaatcttaacctttaatt 54515660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 34238815 - 34238943
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagta 122  Q
    |||||||||||||||| |||||| ||||||||| || |||||||||||||||||  |||||||| ||| ||||||||||| ||| |||||||||||| ||    
T  34238815 gaggagagatattttgactccaaaagtaagtctatagacttactccaaatcttagcctttaattccaaaatcaattaatgactaggattgaataataata 34238914  T
Q  123 attgttagggtgaggtttaattcttttct 151  Q
    |||||||||||||||||||||| ||||||    
T  34238915 attgttagggtgaggtttaatttttttct 34238943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 41527810 - 41527682
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagta 122  Q
    |||||||||||||||  ||| |||||||| ||| || |||||||||||||||||| |||||||| ||| ||||||||||| ||| |||||||||| | ||    
T  41527810 gaggagagatattttaactctaagagtaaatctatatacttactccaaatcttaacctttaattccaaaatcaattaatgactaggattgaataacaata 41527711  T
Q  123 attgttagggtgaggtttaattcttttct 151  Q
    |||||||||||||| ||||||| ||||||    
T  41527710 attgttagggtgagatttaattgttttct 41527682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 7697467 - 7697546
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatg 102  Q
    |||| ||||||||||| ||| |||||||||| |   ||||||||||||||||| || ||||||| |||||| ||||||||    
T  7697467 gaggggagatattttgactctaagagtaagtatgataacttactccaaatcttgatttttaattccaatattaattaatg 7697546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 41320007 - 41320058
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatct 74  Q
    |||||| ||||||||| |||||||||||||| | || |||||||||||||||    
T  41320007 gaggagggatattttgactccaagagtaagtttatagacttactccaaatct 41320058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 41320833 - 41320782
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatct 74  Q
    |||||||||||||||| |||||| ||||||| | || |||||||||||||||    
T  41320833 gaggagagatattttgactccaatagtaagtttatagacttactccaaatct 41320782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 24983123 - 24983213
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattga 113  Q
    |||||| ||||| | | |||||||||||||||| |||| |||||| ||||||||  | || ||||||| || ||||||||| || ||||||    
T  24983123 gaggagggatatatcgactccaagagtaagtctttaaagttactctaaatcttagcccttgatttcaaaattaattaatggttatgattga 24983213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 16155979 - 16156068
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataata 119  Q
    ||||||||| |||||| ||||||| |    |||||||||||||||||  |||| |||| | |||||||| ||||||  ||||||||||||    
T  16155979 gatattttgactccaatagtaagtttggttacttactccaaatcttagcctttgattttattatcaattgatggcttggattgaataata 16156068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 34239627 - 34239582
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatctt 75  Q
    ||||||||| |||||||||||||||| || | ||||||||||||||    
T  34239627 gatattttgactccaagagtaagtctatagatttactccaaatctt 34239582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 13545413 - 13545369
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatct 74  Q
    ||||||||| |||||||||||||| | || |||||||||||||||    
T  13545413 gatattttgactccaagagtaagtttatagacttactccaaatct 13545369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 41608998 - 41608914
Alignment:
Q  132 gtgaggtttaattcttttctgcactgaaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacgacagacaacat 216  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41608998 gtgaggtttaattcttttctgcactggaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacggcagacaacat 41608914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 8469863 - 8469735
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagta 122  Q
    |||||| ||||||||| |||||||||||| | | || |||||||| ||||||||  |||||||| ||| ||||||||||| ||| ||| |||||||| ||    
T  8469863 gaggagggatattttgactccaagagtaaatttatagacttactctaaatcttagcctttaattccaaaatcaattaatgactaggatagaataataata 8469764  T
Q  123 attgttagggtgaggtttaattcttttct 151  Q
    |||||||||||||||||||||| ||||||    
T  8469763 attgttagggtgaggtttaattgttttct 8469735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 41609067 - 41608999
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaat 91  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41609067 gaggagggatattttgacttcaagagtaagtctctaaacttactccaaatcttgatctttaatttcaat 41608999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 25109970 - 25109898
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatg 102  Q
    ||||||||| |||||||||||||| | | ||||||||||||||| | | |||||||||||||||  |||||||    
T  25109970 gatattttgactccaagagtaagtgtgttaacttactccaaatcatgacctttaatttcaatattgattaatg 25109898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 25169062 - 25168990
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatg 102  Q
    ||||||||| |||||||||||||| | | ||||||||||||||| | | |||||||||||||||  |||||||    
T  25169062 gatattttgactccaagagtaagtgtgttaacttactccaaatcatgacctttaatttcaatattgattaatg 25168990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 7209704 - 7209645
Alignment:
Q  44 aagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatgg 103  Q
    |||||||||||| | |||||||||||||||||||| ||||| |  |||||||||||||||    
T  7209704 aagagtaagtctattaacttactccaaatcttaatatttaactctaatatcaattaatgg 7209645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 41608916 - 41608878
Alignment:
Q  259 catgatttgaaaatttgatttcaaatcaaagtcatatgt 297  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  41608916 catgatttgaaaatttgatttcaaatcatagtcatatgt 41608878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 3389260 - 3389335
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||||||| |||||||||||||| |   | ||||||||||||||| | ||||||||||||| |  ||||||||||    
T  3389260 gatattttgactccaagagtaagtgtgatatcttactccaaatcttgacctttaatttcaattttgattaatggct 3389335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 27100433 - 27100350
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggcta 106  Q
    |||||| ||||||||| |||||||||||| |||  ||| |||||||| ||||||  | || |||| ||||| ||||||||||||    
T  27100433 gaggagggatattttgactccaagagtaactctaaaaagttactccacatcttagccattgattttaatatgaattaatggcta 27100350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 3636972 - 3636898
Alignment:
Q  31 atattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    |||||||| |||||||||||||  |   ||||||||||||||||| |||||||||| |||| |  ||||||||||    
T  3636972 atattttgactccaagagtaagggtaataacttactccaaatcttgatctttaattgcaattttgattaatggct 3636898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 41608409 - 41608459
Alignment:
Q  24 aggagagatattttggctccaagagtaagtctctaaacttactccaaatct 74  Q
    ||||| ||||||||| ||| || |||||||||||||||||||| |||||||    
T  41608409 aggagggatattttgactctaaaagtaagtctctaaacttacttcaaatct 41608459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 39322570 - 39322454
Alignment:
Q  114 ataatagtaattgttagggtgaggtttaattcttttctgcactgaaaaacggcaaaacgcttaacgctgcaaaagcttgtcatgacaaaacgacagacaa 213  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| | |||||||| ||||||  ||||||||| | || ||    
T  39322570 ataatagtaattgttagggtgaggtttaattcttttcttcactggaaaacgtcaaaacgcttatccctgcaaaaccttgtctcgacaaaacgccggaaaa 39322471  T
Q  214 cattaaactcatgatca 230  Q
    ||| || ||| ||||||    
T  39322470 catcaacctcttgatca 39322454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 32319877 - 32319800
Alignment:
Q  26 gagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatgg 103  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||| || | |||||| |  |||||||||||||||    
T  32319877 gagagatattttgactccaagagtaagtctattaacttactccaaattttgacctttaactctaatatcaattaatgg 32319800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 10296999 - 10296931
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaat 91  Q
    |||| ||||||||||| |||||||||||||| |   ||||||||||||||||| | |||||||| ||||    
T  10296999 gaggggagatattttgactccaagagtaagtgtaataacttactccaaatcttgacctttaattacaat 10296931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 14396715 - 14396640
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||||||| |||||||||||||| |   | ||||||||||||||| | ||||||||||||| |  ||||||||||    
T  14396715 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaatttcaattttgattaatggct 14396640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 41826646 - 41826709
Alignment:
Q  28 gagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaat 91  Q
    ||||||||||| |||||||||||||| |   | ||||||||||||||| | |||||||||||||    
T  41826646 gagatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaatttcaat 41826709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 18607776 - 18607708
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaat 91  Q
    |||| ||||||||||| ||| |||||||||| |   ||||||||||||||||| | |||||||| ||||    
T  18607776 gaggggagatattttgactcaaagagtaagtgtaataacttactccaaatcttgacctttaattgcaat 18607708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 47371061 - 47370941
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagta 122  Q
    |||||| ||||||||| |||||||||||||| | | || ||||| || ||||| | ||||||||  |||||||||||||||||| |||||| ||||| ||    
T  47371061 gaggagggatattttgactccaagagtaagtttgttaagttacttcacatcttgacctttaattctaatatcaattaatggctaagattgattaataata 47370962  T
Q  123 attgttagggtgaggtttaat 143  Q
    |||||||  ||||||||||||    
T  47370961 attgttatagtgaggtttaat 47370941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 5064524 - 5064453
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaat 101  Q
    ||||||||| ||||||| |||||||| ||||||| |||||||||||   | ||||||| |||||||||||||    
T  5064524 gatattttgactccaagcgtaagtctttaaacttcctccaaatcttgtcccttaattttaatatcaattaat 5064453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 6944738 - 6944813
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||||||| |||||||||||||| |   ||||||||||||||||| | |||||||| |||| |  ||||||||||    
T  6944738 gatattttgactccaagagtaagtgtaataacttactccaaatcttgacctttaattgcaattttgattaatggct 6944813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 27109766 - 27109844
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatgg 103  Q
    |||| ||||| ||| ||||||||||||||   |||| |||||||||||||||  | ||||||||||||| ||| |||||    
T  27109766 ggagggatatattgactccaagagtaagtgcttaaagttactccaaatcttagcccttaatttcaatattaatcaatgg 27109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 22339893 - 22339954
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaat 91  Q
    ||||||||| |||||||||||||| |   |||| |||||||||||| |||||||||| ||||    
T  22339893 gatattttgactccaagagtaagtgtaataactcactccaaatcttgatctttaattacaat 22339954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 1953562 - 1953506
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatt 86  Q
    ||||||||| |||||||||||||| |   | ||||||||||||||||| ||||||||    
T  1953562 gatattttgactccaagagtaagtgtaatatcttactccaaatcttaacctttaatt 1953506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 5044867 - 5044911
Alignment:
Q  61 cttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||||||||||||| ||||||||||||||| |  ||||||||||    
T  5044867 cttactccaaatcttgatctttaatttcaattttgattaatggct 5044911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 32527599 - 32527551
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatc 73  Q
    |||||||||||||| ||| |||||||||| | || ||||||||||||||    
T  32527599 ggagagatattttgactctaagagtaagtttgtagacttactccaaatc 32527551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 18121844 - 18121964
Alignment:
Q  27 agagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaattg 126  Q
    |||||||||||| |||||||||||||| | | |  |||||||| |||||   |||| |||  ||||| |||||||||||| |||||| ||||| ||||||    
T  18121844 agagatattttgactccaagagtaagtttgttatgttactccacatcttggcctttgattctaatatgaattaatggctatgattgattaataataattg 18121943  T
Q  127 ttagggtgaggtttaattctt 147  Q
    |||   |||||||||||||||    
T  18121944 ttataatgaggtttaattctt 18121964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 16519425 - 16519350
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||||||| |||||||||||||| |   ||||||||||||||||||| |||||||| |||| | |||||||||||    
T  16519425 gatattttgactccaagagtaagtgtaataacttactccaaatcttaacctttaattgcaattttaattaatggct 16519350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 50278074 - 50277999
Alignment:
Q  27 agagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatg 102  Q
    |||||||||||| |||||||||||||| | | ||||||||||||||| | | |||||||||||||||  |||||||    
T  50278074 agagatattttgactccaagagtaagtgttttaacttactccaaatcatgacctttaatttcaatattgattaatg 50277999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 50289742 - 50289667
Alignment:
Q  27 agagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatg 102  Q
    |||||||||||| |||||||||||||| | | ||||||||||||||| | | |||||||||||||||  |||||||    
T  50289742 agagatattttgactccaagagtaagtgttttaacttactccaaatcatgacctttaatttcaatattgattaatg 50289667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 4968982 - 4968932
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatctt 75  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||    
T  4968982 ggagaaatattttgactccaagagtaagtctataaacttactccaaatctt 4968932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 39773453 - 39773381
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatg 102  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||| | |||||| |  ||||| ||||||||    
T  39773453 gatattttgactccaagagtaagtctattaacttactccaaatcttgacctttaactctaatattaattaatg 39773381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 18122407 - 18122296
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaattgtta 129  Q
    ||||||||| |||||| ||||||| | | |  |||||||| |||||   ||||||||  ||||||||||||||| || |||||| ||||| |||||||||    
T  18122407 gatattttgactccaatagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataattgtta 18122308  T
Q  130 gggtgaggttta 141  Q
      ||||||||||    
T  18122307 tagtgaggttta 18122296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 5496501 - 5496437
Alignment:
Q  27 agagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaat 91  Q
    |||||||||||| |||||||||||||| |   | ||||||||||||||| | |||||||||||||    
T  5496501 agagatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaatttcaat 5496437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 17238529 - 17238478
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatct 74  Q
    |||||| ||||||||| |||||||||||||| | || |||||||||||||||    
T  17238529 gaggagggatattttgactccaagagtaagtttatagacttactccaaatct 17238478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 42023211 - 42023286
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||||||| |||||||||||||| |   ||||||||||||||||| | ||||||||  |||||  ||||||||||    
T  42023211 gatattttgactccaagagtaagtgtaataacttactccaaatcttgacctttaattgtaatattgattaatggct 42023286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 47966995 - 47967072
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatgg 103  Q
    |||| ||||| ||| |||||||||||||| | |||| |||||||||||||| | | ||||||||||||| ||| |||||    
T  47966995 ggagggatatattgactccaagagtaagtgtttaaagttactccaaatctt-agccttaatttcaatattaatcaatgg 47967072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 30661889 - 30661797
Alignment:
Q  44 aagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaattgttagggtgagg 137  Q
    |||||||||||| || ||||| |||||||| | ||| || |||| ||||  |||||||||||| |||| ||| ||| |||||||||| ||||||    
T  30661889 aagagtaagtctttagacttagtccaaatcatgatccttcattttaataataattaatggctatgatt-aattataataattgttagtgtgagg 30661797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 39870918 - 39871033
Alignment:
Q  31 atattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattg---aataatagtaattgt 127  Q
    |||||||| |||||| ||||||| | | |  |||||||| |||||   ||||||||  ||||||||||||||| || |||||   ||||||| |||||||    
T  39870918 atattttgactccaatagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataataattgt 39871017  T
Q  128 tagggtgaggtttaat 143  Q
    ||  ||||||||||||    
T  39871018 tatagtgaggtttaat 39871033  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 48481688 - 48481627
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaat 91  Q
    ||||||||| |||||||||||||| |   |||||||| |||||||| || ||||||||||||    
T  48481688 gatattttgactccaagagtaagtgtaataacttacttcaaatcttgatatttaatttcaat 48481627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 35576044 - 35575988
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatt 86  Q
    ||||||||| |||||||||||||| |   | ||||||||||||||| ||||||||||    
T  35576044 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgatctttaatt 35575988  T

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Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 3303 - 3425
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaat 124  Q
    |||||||||||||  ||| |||||||||| | | |  |||||||| |||||   ||||||||  ||||| |||||||||||| |||||| ||||| ||||    
T  3303 ggagagatattttcactctaagagtaagtttgttatgttactccacatcttggcctttaattctaatatgaattaatggctaggattgattaataataat 3402  T
Q  125 tgttagggtgaggtttaattctt 147  Q
    |||||   |||||||||||||||    
T  3403 tgttataatgaggtttaattctt 3425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 15358 - 15480
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaat 124  Q
    |||||||||||||  ||| |||||||||| | | |  |||||||| |||||   ||||||||  ||||| |||||||||||| |||||| ||||| ||||    
T  15358 ggagagatattttcactctaagagtaagtttgttatgttactccacatcttggcctttaattctaatatgaattaatggctaggattgattaataataat 15457  T
Q  125 tgttagggtgaggtttaattctt 147  Q
    |||||   |||||||||||||||    
T  15458 tgttataatgaggtttaattctt 15480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 3879 - 3775
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaat 124  Q
    |||| ||||||||| |||||||||||||| | | |  |||||||| |||||   ||||||||  ||||||||||||||| || |||||| ||||| ||||    
T  3879 ggagggatattttgactccaagagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataat 3780  T
Q  125 tgtta 129  Q
    |||||    
T  3779 tgtta 3775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 15934 - 15830
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaat 124  Q
    |||| ||||||||| |||||||||||||| | | |  |||||||| |||||   ||||||||  ||||||||||||||| || |||||| ||||| ||||    
T  15934 ggagggatattttgactccaagagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataat 15835  T
Q  125 tgtta 129  Q
    |||||    
T  15834 tgtta 15830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 26667490 - 26667368
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaat 124  Q
    |||||||||||||  ||| |||||||||| | | |  |||||||| |||||   ||||||||  ||||| |||||||||||| |||||| ||||| ||||    
T  26667490 ggagagatattttcactctaagagtaagtttgttatgttactccacatcttggcctttaattctaatatgaattaatggctaggattgattaataataat 26667391  T
Q  125 tgttagggtgaggtttaattctt 147  Q
    |||||   |||||||||||||||    
T  26667390 tgttataatgaggtttaattctt 26667368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 26666914 - 26667018
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggctacgattgaataatagtaat 124  Q
    |||| ||||||||| |||||||||||||| | | |  |||||||| |||||   ||||||||  ||||||||||||||| || |||||| ||||| ||||    
T  26666914 ggagggatattttgactccaagagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataat 26667013  T
Q  125 tgtta 129  Q
    |||||    
T  26667014 tgtta 26667018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 2480057 - 2479979
Alignment:
Q  25 ggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatgg 103  Q
    |||| ||||| ||| ||||||||||||||   |||| |||||||||||||||  | ||||||||||||| ||| |||||    
T  2480057 ggagggatatattgactccaagagtaagtgcttaaagttactccaaatcttagcccttaatttcaatattaatcaatgg 2479979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 13220861 - 13220788
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatgg 103  Q
    ||||||||| |||||||| ||| | |   |||||||||||||||||||  |||||||||||| | |||||||||    
T  13220861 gatattttgactccaagaataaatgtaataacttactccaaatcttaacttttaatttcaattttaattaatgg 13220788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 33707656 - 33707575
Alignment:
Q  24 aggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatggct 105  Q
    ||||| ||||||||| ||| |||||||||| | | ||||| |||||||||   | |||||||||||||||  ||||||||||    
T  33707656 aggagggatattttgactctaagagtaagtgttttaacttgctccaaatcaagacctttaatttcaatattgattaatggct 33707575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 35073488 - 35073561
Alignment:
Q  30 gatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaatatcaattaatgg 103  Q
    ||||||||| |||||||||||| | | |  ||||||||||||||||| |||||||||  | | |||||||||||    
T  35073488 gatattttgactccaagagtaaatttgttcacttactccaaatcttagtctttaattgtattttcaattaatgg 35073561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 32020290 - 32020222
Alignment:
Q  23 gaggagagatattttggctccaagagtaagtctctaaacttactccaaatcttaatctttaatttcaat 91  Q
    |||| ||||||||||| |||||||||||||| |   ||||||||||||||| | | |||||||| ||||    
T  32020290 gaggggagatattttgactccaagagtaagtgtaataacttactccaaatcctgacctttaattgcaat 32020222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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