View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11131_low_17 (Length: 295)
Name: NF11131_low_17
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 2017212 - 2016934
Alignment:
| Q |
1 |
atttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017212 |
atttgattttgggggaaacaactacaccacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgt |
2017113 |
T |
|
| Q |
101 |
tgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgttactgtaggtgcattcaacaatcactcagcagtacatgacttcaatcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017112 |
tgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgttactgtaggtgcattcaacaatcactcagcagtacatgacttcaatcctt |
2017013 |
T |
|
| Q |
201 |
gtggttatgcnnnnnnnngttgaaaatggagcctgcactttcgaatccacggacctcctcaagttggagaagaaggaatt |
280 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017012 |
gtggttatgc-tttttttgttgaaaatggagcctacactttcgaatccacggacctcctcaagttggagaagaaggaatt |
2016934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 40566464 - 40566737
Alignment:
| Q |
3 |
ttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttg |
102 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||| ||||||| ||||||||| || ||||||| |||||| | |||||||||| || ||||||||||| |
|
|
| T |
40566464 |
ttgattctgggggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccagtcaatcttgctcaggtactggttgttg |
40566563 |
T |
|
| Q |
103 |
tcagatttcaataccgcaaggtcatttgttcgaga-aagtgtcctttgttactgtaggtgcattcaacaatcactcagcagtacatgacttcaatccttg |
201 |
Q |
| |
|
||||||||||||| ||||||| | |||| |||| ||||| ||| | | ||| |||| ||||||||||||||||| |||||||| |||||||| || |
|
|
| T |
40566564 |
cgagatttcaataccccaaggtcgtgtgtt-gagagaagtggcctatacttctgcaggtatattcaacaatcactcagacgtacatgatttcaatccctg |
40566662 |
T |
|
| Q |
202 |
tggttatgcnnnnnnnngttgaaaatggagcctgcactttcgaatccacggacctcctcaagttggagaagaagga |
277 |
Q |
| |
|
||||||| | |||||||||||||||| || ||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
40566663 |
tggttattc-ttttgtggttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaagga |
40566737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 40595875 - 40595958
Alignment:
| Q |
34 |
atgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaatacc |
117 |
Q |
| |
|
|||| |||| |||||||||||| ||| |||||| ||||||||||||||||| |||||| | ||||||||| ||||||||||||| |
|
|
| T |
40595875 |
atgtgtggccttgtgcaacaggcttagtgatattgtggccaatgaatcttgttccggcccaggttgttgtgagatttcaatacc |
40595958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 40589451 - 40589562
Alignment:
| Q |
14 |
ggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaa |
113 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||||| |||| |||| |||||||| ||||| || || |||||||||| |||||||| |
|
|
| T |
40589451 |
ggaaacaactacacctctggatgtttggcttggtgcaacaggcacgctgatctcgttgccaatgagtcttgttctggtcctggttgttgccagatttcgg |
40589550 |
T |
|
| Q |
114 |
taccgcaaggtc |
125 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
40589551 |
taccccaaggtc |
40589562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 40589606 - 40589643
Alignment:
| Q |
172 |
tcactcagcagtacatgacttcaatccttgtggttatg |
209 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
40589606 |
tcactcagcagtatatgacttcaatccgtgtggttatg |
40589643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University