View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_19 (Length: 287)
Name: NF11131_low_19
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 2700622 - 2700898
Alignment:
| Q |
1 |
gatagcccatagaagagtatagcaccacacatta----tatatcttttactaattaaggaccaacataattagcatcacaaaactatggttttaggttaa |
96 |
Q |
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| T |
2700622 |
gatagcacatacaagagtatagcaccacacattaattatatatcttttactaattaaggaccaacataattagcatcacaaaactatggttttaggctaa |
2700721 |
T |
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| Q |
97 |
acaaatctaataattgccaattaattataacaacaacaataacaacnnnnnnntctaatttaaattttattgaaaaacatctatgttttgtaaaacatac |
196 |
Q |
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| T |
2700722 |
acaaatctaataattgccaattaaatataacaacaacaataacaacaaaaaaatctaatttaaattttattgaaaaacatctatgttttgtaaaacatac |
2700821 |
T |
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| Q |
197 |
tcacaaaacaactaaagttaataaggttacctgataaagcattgagaccattgaaacaagttttaaggaatgatgtg |
273 |
Q |
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| T |
2700822 |
tcacaaaacaactaaagttaataaggttacctgataaagcattgagaccattgaaacaagttttaaggaatgatgtg |
2700898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 10843382 - 10843449
Alignment:
| Q |
199 |
acaaaacaactaaagttaataaggttacctgataaagcattgagaccattgaaacaagttttaaggaa |
266 |
Q |
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| T |
10843382 |
acaaaacaactagggttaataaggttacctgttaaagcattgagaccattgaaacaagttttaaggaa |
10843449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 10843231 - 10843325
Alignment:
| Q |
29 |
acattatatatcttttactaattaa-ggaccaacataattagcatcacaaaactatggttttaggttaaacaaatctaataattgccaattaatt |
122 |
Q |
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| T |
10843231 |
acattatatatcttttattaatttgtggaccaacataattatcatcacaaatctctggttttaggctaatctaatccattaactgtcaattaatt |
10843325 |
T |
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