View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_20 (Length: 285)
Name: NF11131_low_20
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 46892683 - 46892833
Alignment:
| Q |
1 |
ctctttttcttgattttcatctcaagagttatgctaattctaagaacaagaaacgtactacggataaagactcgtgacgttcatgtcattatcatcgtca |
100 |
Q |
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| T |
46892683 |
ctctttttcttgattttcatctcaagagttatgctaattctaagaacaagaaacgtactacggataaagactcgtgacgttcatgtcattatcatcgtca |
46892782 |
T |
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| Q |
101 |
ctctttgttggctgttgttgttctttaataacatgtaaggaattcacattg |
151 |
Q |
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| T |
46892783 |
ctctttgttggctgttgttggtctttaataacatgtaagaaattcacattg |
46892833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 46892854 - 46892946
Alignment:
| Q |
179 |
tttttacaacttagttgttcaacaattatgcaatgctcaaccaatactttatttga---ttgttttttacttatgttttcatcattttaattt |
268 |
Q |
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| T |
46892854 |
tttttacaacttagttgttcaacaattatacaatgctcaaccaatactttatttgattgttgttttttacttatgttttcatcattttcattt |
46892946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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