View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_27 (Length: 241)
Name: NF11131_low_27
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_27 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 7237418 - 7237195
Alignment:
| Q |
18 |
acataagttaccatccctcctgcttttattttggtaccatctggcaacacatcatcctctatcacacccttgggatccttcaatcaacaattgatatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7237418 |
acataagttaccatccctcctgcttttattttggtaccatctggcaacacatcatcctctatcacacccttgggatccttcaatcaacaattgatatttg |
7237319 |
T |
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| Q |
118 |
cacaaaaacattattagtt-agttattgatgtatttaaaacaacatttttagcatctatatgtaaactgaatcgtagtagtactatatacacaacttgta |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7237318 |
cacaaaaacattattagttaagttattgatgtatttaaaacaacatttttagcatctatatgtaaactg-atcgtagtagtactatatacacaacttgta |
7237220 |
T |
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| Q |
217 |
acactgaaaccctaattcttatcac |
241 |
Q |
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|||| |||||||||||||||||||| |
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| T |
7237219 |
acaccgaaaccctaattcttatcac |
7237195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 49590842 - 49590961
Alignment:
| Q |
18 |
acataagttaccatccctcctgcttttattttggtaccatctggcaacacatcatcctctatcacacccttgggatccttcaatcaacaattgatatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49590842 |
acataagttaccatccctcctgcttttatttttgtaccatccggcaacacatcatcctctatcacacccttgggatccttcaatcaacaattgatatttg |
49590941 |
T |
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| Q |
118 |
cacaaaaacattattagtta |
137 |
Q |
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| T |
49590942 |
cactaaaacattattagtta |
49590961 |
T |
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 1415477 - 1415541
Alignment:
| Q |
177 |
tgtaaactgaatcgtagtagtactatatacacaacttgtaacactgaaaccctaattcttatcac |
241 |
Q |
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| T |
1415477 |
tgtaaactgaatcatagtagtactatatatacaacttgtaacattgaaaccctaattcttatcac |
1415541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 9627315 - 9627253
Alignment:
| Q |
177 |
tgtaaactgaatcgtagtagtactatatacacaacttgtaacactgaaaccctaattcttatcac |
241 |
Q |
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| T |
9627315 |
tgtaaactgaatcgtagtagtactatatattg--cttgtaacactgaaaccctaattcttatcac |
9627253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 12156016 - 12155969
Alignment:
| Q |
194 |
tagtactatatacacaacttgtaacactgaaaccctaattcttatcac |
241 |
Q |
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| T |
12156016 |
tagtactatatatacagtttgtaacactgaaatcctaattcttatcac |
12155969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 8540986 - 8541036
Alignment:
| Q |
177 |
tgtaaactgaatcgtagtagtactatatacacaacttgtaacactgaaacc |
227 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||| || |||||| |
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| T |
8540986 |
tgtaaactgaatcgtagtagtactatatatacagcttgtaaaacagaaacc |
8541036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 8543037 - 8543065
Alignment:
| Q |
177 |
tgtaaactgaatcgtagtagtactatata |
205 |
Q |
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| T |
8543037 |
tgtaaactgaatcgtagtagtactatata |
8543065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 31395341 - 31395288
Alignment:
| Q |
179 |
taaactgaatcgtagtagtactatatacacaacttgtaacactgaaaccctaat |
232 |
Q |
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|||| |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
31395341 |
taaattgaatcgtagtagtactatatatattgcttgtaacactgaaaccctaat |
31395288 |
T |
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