View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_28 (Length: 241)
Name: NF11131_low_28
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 7215283 - 7215451
Alignment:
| Q |
1 |
catgaaaagctaatttggaaaacgatattagtatgtcatgggagattttctaatccagaaatatttaattaagtgtttgtttggttaagtgttttatgtt |
100 |
Q |
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| T |
7215283 |
catgaaaagctaatttggaaaacgatattagtatgtcatgggagattttctaatccaaaaatatttaattaagtgtttgtttggttaagcgttttatgtt |
7215382 |
T |
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| Q |
101 |
gttaaagaatgttacggaaaaatggaaggaaggcacaacaagagagaggaaaaagatttcatttgatgg |
169 |
Q |
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| T |
7215383 |
gttaaagaatgttacggaaaaatggaagggacgcgcagcaagagagaggaaaaagatttcatttgatgg |
7215451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 21455622 - 21455764
Alignment:
| Q |
27 |
attagtatgtcatgggagattttctaatccagaaatatttaattaagtgtttgtttggttaagtgttttatgttgttaaagaatgttacggaaaaatgga |
126 |
Q |
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| T |
21455622 |
attagtatgtcatggaagattttctaatccagaaatatttaactaagtgtttgtttggttaagcgttttatgttgttaaagaatgttacggaaaaatgga |
21455721 |
T |
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| Q |
127 |
aggaaggcacaacaagagagaggaaaaagatttcatttgatgg |
169 |
Q |
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| T |
21455722 |
aggaacgcacaacaagagagaggaaaaagatttcatttgatgg |
21455764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 21455786 - 21455818
Alignment:
| Q |
192 |
actattgtgttggattgaaatgtttctttaaat |
224 |
Q |
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| T |
21455786 |
actattgtgttggattgaaatgtttctttaaat |
21455818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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