View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_29 (Length: 240)
Name: NF11131_low_29
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 5822219 - 5822426
Alignment:
| Q |
17 |
aagtaacaaataattacattattcaaacgaattctaatgaaaagaatgtaacttaaatatacctataattaaataaaacattattatttatacaaagttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5822219 |
aagtaacaaataattacattattcaaacgaattctaatgaaaagaatg-agcttaaatataaatataattaaataaaacattattatttatacaaagttg |
5822317 |
T |
|
| Q |
117 |
atgcttatttcttatagaaa--gtctttttacggattaagttgttttacgatatgaagtccagttgaaatctccacctttcaatcatttctcaaggactt |
214 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
5822318 |
atgcttatttcttatagaaaaagtctttttatggattaagttgttttactatatgaagtccatttgaaatctccaccattcattcatttctcaaggactt |
5822417 |
T |
|
| Q |
215 |
tgaccacat |
223 |
Q |
| |
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||||||||| |
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| T |
5822418 |
tgaccacat |
5822426 |
T |
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