View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_3 (Length: 567)
Name: NF11131_low_3
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 41906452 - 41907007
Alignment:
| Q |
1 |
cgtgaaaacttaactttgattagttgtttgttttcggtaataagcaaatgaaataatgattataatttgtaaatttatgaattgtgatgttacgtgagag |
100 |
Q |
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| T |
41906452 |
cgtgaaaacttaactttgattagttgtttgttttcggtaataagcaaatgaaataaggattataatttgtaaatttatgaattgtgatgttacgtgagag |
41906551 |
T |
|
| Q |
101 |
cgttacctggctctctgttcagtaatagttgaacttttgagtgtggaacttgtaacaaatttgttaggtaggtgaaggggatcaactttactattatcgg |
200 |
Q |
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| T |
41906552 |
cgttacctggctctctgttcagtaatagttgaacttttgagtgtggaacttgtaacaaatttgttaggtaggtgaaggggatcaactttactattatcgg |
41906651 |
T |
|
| Q |
201 |
cataattacttttgagtatgtaggtgattaaaactaattaattgttattattatgggacccgaatatcaccacgcgcgtgtttgggtggtttattatttg |
300 |
Q |
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| T |
41906652 |
cataattacttttgagtatgtaggttattaaaactaattaattgttattattatgggacccgaatatcaccacgcgcgtgtttgggtggtttattatttg |
41906751 |
T |
|
| Q |
301 |
tgaaaccgaaacttaaacggtgtcaaagcggcggaatctcggtgcttttgaacaccgctaccacctctctaacctgaccttcattacaccaccgattgtt |
400 |
Q |
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| T |
41906752 |
tgaaacccaaacttaaacggtgtcaaagcggcggaatctcggtgcttttgaacaccgctaccacctctctaacctgaccttcattacaccaccgattgtt |
41906851 |
T |
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| Q |
401 |
ccttttgattttttctatttctaatgaaaacaaaaataagttcagatgataaatgagcttcaccaaaaccaaagaatccgagttgattcatagataaaac |
500 |
Q |
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| T |
41906852 |
tcttttgattttttctatttctaatgaaaacaaaaataagttcagatgataaatgagcttcaccaaaaccaaagaatcctagttgattcatagataaaac |
41906951 |
T |
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| Q |
501 |
agttcttgatcatgttatcattatgtaacggccaaacttcaagttataaagttcat |
556 |
Q |
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| T |
41906952 |
agttcttagtcatgttatccttacctaacggccaaacttcaaattataaagttcat |
41907007 |
T |
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