View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_31 (Length: 239)
Name: NF11131_low_31
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 5730092 - 5730299
Alignment:
| Q |
14 |
gagatgaattaccacatgatcatctgatttccttttacccatccatacaaaagaattacaattatctctcttaatgttaaaaaacaacaaggttttgggc |
113 |
Q |
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| T |
5730092 |
gagatgaattaccacatgatcatctgatttccttttacccatccatacaaaagaattacaattatttctcttaatgttaaaaaataacaaggttttgggc |
5730191 |
T |
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| Q |
114 |
atggaatgattggggtgataactttttgtagaaagcataaaaa-----------------gaaaaatacgtagaggaagaagatgaaaaacccccatgat |
196 |
Q |
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| T |
5730192 |
atggaatgaatggggtgataactttttgtagaaagcataaaaagaaaattaaaaataaaagaaaaatatgtagaggaagaagatgaaaaacccccatgat |
5730291 |
T |
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| Q |
197 |
tggattag |
204 |
Q |
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| T |
5730292 |
tggattag |
5730299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 5800610 - 5800817
Alignment:
| Q |
14 |
gagatgaattaccacatgatcatctgatttccttttacccatccatacaaaagaattacaattatctctcttaatgttaaaaaacaacaaggttttgggc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
5800610 |
gagatgaattaccacatgatcatctgatttccttttacccatccatacaaaagaattacaattatttctcttaatgttaaaaaataacaaggttttgggc |
5800709 |
T |
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| Q |
114 |
atggaatgattggggtgataactttttgtagaaagcataaaaa-----------------gaaaaatacgtagaggaagaagatgaaaaacccccatgat |
196 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
5800710 |
atggaatgaatggggtgataactttttgtagaaagcataaaaagaaaattaaaaataaaagaaaaatatgtagaggaagaagatgaaaaacccccatgat |
5800809 |
T |
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| Q |
197 |
tggattag |
204 |
Q |
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|||||||| |
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| T |
5800810 |
tggattag |
5800817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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