View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_32 (Length: 234)
Name: NF11131_low_32
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 1236078 - 1235872
Alignment:
| Q |
11 |
gagatgaagaaaaagaatcaattagtgccatcaaaaaacccacatgaatttgaccaagttgaaatagttgtgaggtctatagaagaagataaaagcaacc |
110 |
Q |
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| T |
1236078 |
gagatgaagaaaaagaatcaattagtgccatcaaaaaacccacatgaatttgacccagttgaaatagttgtgaggtctatagaaaaagataaaagcaacc |
1235979 |
T |
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| Q |
111 |
tcaacaacaataatcagatggttaaggataatgaagattcacaaacagatgaacatgaacaacaaagtcaagaaaaatgaggaggggtaaaagaagttgc |
210 |
Q |
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| T |
1235978 |
tcaacaacaataatcagatggttaaggataatgaagattcacaaacagatgaacatgaacaacaaagtcaagaaaaatgaggaggggtaaaagaagttgc |
1235879 |
T |
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| Q |
211 |
atgtaat |
217 |
Q |
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||||||| |
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| T |
1235878 |
atgtaat |
1235872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 916070 - 915996
Alignment:
| Q |
11 |
gagatgaagaaaaagaatcaattagtgccatcaaaaaacccacatgaatttgaccaagttgaaatagttgtgagg |
85 |
Q |
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|||||||||||||| |||||||||||||||||| ||| | | ||||||||||| |||||||||||||||||| |
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| T |
916070 |
gagatgaagaaaaataatcaattagtgccatcacaaagctccaatgaatttgacactgttgaaatagttgtgagg |
915996 |
T |
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