View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11131_low_33 (Length: 224)

Name: NF11131_low_33
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11131_low_33
NF11131_low_33
[»] chr5 (5 HSPs)
chr5 (14-208)||(2326365-2326559)
chr5 (136-205)||(4100471-4100540)
chr5 (137-205)||(4146508-4146576)
chr5 (146-205)||(39576368-39576427)
chr5 (149-205)||(39572365-39572421)
[»] chr8 (5 HSPs)
chr8 (97-205)||(9841942-9842050)
chr8 (14-59)||(9902803-9902848)
chr8 (167-205)||(9860653-9860691)
chr8 (14-59)||(9841853-9841898)
chr8 (140-205)||(27360973-27361038)
[»] chr1 (3 HSPs)
chr1 (146-204)||(46672108-46672166)
chr1 (129-205)||(5054222-5054298)
chr1 (146-204)||(46446001-46446059)
[»] chr3 (1 HSPs)
chr3 (146-205)||(7256841-7256900)
[»] scaffold0658 (1 HSPs)
scaffold0658 (140-205)||(2859-2924)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 2326559 - 2326365
Alignment:
Q  14 gatgaatgttgacaaggaaattattatgcgagaatatccacttcccaatgagttgaatattctggctaaaaattgtttaatgttgggtaatcgcctctct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326559 gatgaatgttgacaaggaaattattatgcgagaatatccacttcccaatgagttgaatattctggctaaaaattgtttaatgttgggtaatcgcctctct 2326460  T
Q  114 tgcattatgtctaatgattttaatagaacatttcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggaccatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2326459 tgcattatgtctaatgattttaatagaacatttcaaatctacattttgaattttgattcaggaaaattgtctctttatcatgagatgggaccatt 2326365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 4100540 - 4100471
Alignment:
Q  136 atagaacatttcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||  |||||||||||||||||||||||    
T  4100540 atagaacatttcaaatctacattttggattttgagttaggaaaatggtctctttatcatgagatgggacc 4100471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 4146508 - 4146576
Alignment:
Q  137 tagaacatttcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    ||||||||||||||||||  ||||| ||||||| | ||||||||  |||||||||||||||||||||||    
T  4146508 tagaacatttcaaatctatgttttggattttgagttaggaaaatggtctctttatcatgagatgggacc 4146576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 39576368 - 39576427
Alignment:
Q  146 tcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    ||||||||||| |||| |||||||||||||| |||  |||||||||||||||||||||||    
T  39576368 tcaaatctacactttggattttgattcaggagaatggtctctttatcatgagatgggacc 39576427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 39572365 - 39572421
Alignment:
Q  149 aatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    ||||||||||||| ||||||||||| ||||||  |||| ||||||||||||||||||    
T  39572365 aatctacattttggattttgattcaagaaaatggtctccttatcatgagatgggacc 39572421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 9841942 - 9842050
Alignment:
Q  97 tgggtaatcgcctctcttgcattatgtctaatgattttaatagaacatttcaaatctacattttgaattttgattcaggaaaattatctctttatcatga 196  Q
    |||| |||||||| |||||||||  | |||| |||  | |||| |||| ||||||||||||| || ||||||||||||||||||  |||||| |||||||    
T  9841942 tgggaaatcgcctttcttgcattgcgactaaagatacttatagtacatatcaaatctacattctggattttgattcaggaaaatggtctcttcatcatga 9842041  T
Q  197 gatgggacc 205  Q
    |||||||||    
T  9842042 gatgggacc 9842050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 9902803 - 9902848
Alignment:
Q  14 gatgaatgttgacaaggaaattattatgcgagaatatccacttccc 59  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||    
T  9902803 gatggatgttgacaaggaaattattctacgagaatatccacttccc 9902848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 9860653 - 9860691
Alignment:
Q  167 tgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  9860653 tgattcaggaaaatggtctctttatcatgagatgggacc 9860691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 9841853 - 9841898
Alignment:
Q  14 gatgaatgttgacaaggaaattattatgcgagaatatccacttccc 59  Q
    |||| ||||||||||||||| |||| | ||||||||||||||||||    
T  9841853 gatggatgttgacaaggaaactattgtacgagaatatccacttccc 9841898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 27360973 - 27361038
Alignment:
Q  140 aacatttcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    ||||| ||||||||| | |||| ||||||||| ||||||||    |||||||||||||||||||||    
T  27360973 aacatatcaaatctatactttggattttgatttaggaaaatggaatctttatcatgagatgggacc 27361038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 46672166 - 46672108
Alignment:
Q  146 tcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggac 204  Q
    |||||||||||||||| ||||||||||||||||||  ||||| ||||||| ||||||||    
T  46672166 tcaaatctacattttggattttgattcaggaaaatggtctctctatcatgcgatgggac 46672108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 5054298 - 5054222
Alignment:
Q  129 gattttaatagaacatttcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    |||||| ||| ||||||||| ||||| |||||| |||||||| | |||||||  |||| ||||||||||||||||||    
T  5054298 gatttttatacaacatttcagatctatattttggattttgatacgggaaaatggtctcattatcatgagatgggacc 5054222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 46446001 - 46446059
Alignment:
Q  146 tcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggac 204  Q
    |||||||||||||||| |||||||||| ||  |||  ||||||||||||||||||||||    
T  46446001 tcaaatctacattttggattttgattcgggggaatggtctctttatcatgagatgggac 46446059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 7256841 - 7256900
Alignment:
Q  146 tcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    |||||||||||||||  ||||||||||| ||||||  ||||||||||||  |||||||||    
T  7256841 tcaaatctacattttagattttgattcaagaaaatggtctctttatcatatgatgggacc 7256900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 2924 - 2859
Alignment:
Q  140 aacatttcaaatctacattttgaattttgattcaggaaaattatctctttatcatgagatgggacc 205  Q
    ||||| ||||||||| | |||| ||||||||| ||||||||    |||||||||||||||||||||    
T  2924 aacatatcaaatctatactttggattttgatttaggaaaatggaatctttatcatgagatgggacc 2859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University