View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11131_low_9 (Length: 422)
Name: NF11131_low_9
Description: NF11131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11131_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 22181666 - 22181920
Alignment:
| Q |
14 |
agacacctaacacaatatcgacaccgacacacagagatagcacaattcccacaaatcaaacacaagtaatcaatttcataactgaacatgctaatcaaga |
113 |
Q |
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| T |
22181666 |
agacacctaacacaatatcgacaccgacacacagagatagcaaaattcccacaaatcaaacacaagtaatcaatttcataactgaacatgctaatcaaga |
22181765 |
T |
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| Q |
114 |
agaaacattaacgacttaattttatttccaaaattaccacaattaactcttcctccataaaactaaatttcaatataaatctaaatccaataacagacc- |
212 |
Q |
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| T |
22181766 |
agaaacattaacgacttaattttatttccaaaattaccacaattaactcttcctccataaaactaaatttcaatataaatctaaatccaataacagacca |
22181865 |
T |
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| Q |
213 |
aaaaaatgcatcgtaacctcgttttctccgacatttaacatcaaaatttcaattt |
267 |
Q |
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| T |
22181866 |
aaaaaatgcatcgtaacctcgttttctccgacatttaacatcaaaatttcaattt |
22181920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 22181962 - 22182012
Alignment:
| Q |
301 |
caagcattgaattcacctataacactagtgcgaatttgagtgagtcgcatt |
351 |
Q |
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| T |
22181962 |
caagcattgaattcacctataacactagtgcgaatttgagtgagtcgcatt |
22182012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 22182045 - 22182087
Alignment:
| Q |
362 |
atagagcaagtaatgatgaacctggtgaggctacggaggaggaaga |
407 |
Q |
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| T |
22182045 |
atagagcaagtaatga---acctggtgaggctacggaggaggaaga |
22182087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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