View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11132_high_1 (Length: 603)

Name: NF11132_high_1
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11132_high_1
NF11132_high_1
[»] chr4 (28 HSPs)
chr4 (56-461)||(4953528-4953935)
chr4 (459-587)||(4954981-4955110)
chr4 (141-264)||(25315292-25315415)
chr4 (178-300)||(1676318-1676442)
chr4 (178-300)||(1682846-1682970)
chr4 (142-300)||(27302710-27302870)
chr4 (143-264)||(9783044-9783165)
chr4 (178-294)||(12111360-12111477)
chr4 (178-294)||(34864322-34864438)
chr4 (178-264)||(5906781-5906867)
chr4 (178-264)||(18897959-18898045)
chr4 (178-264)||(15192171-15192257)
chr4 (299-343)||(26703234-26703278)
chr4 (301-343)||(3797579-3797621)
chr4 (301-343)||(40795327-40795369)
chr4 (300-343)||(15404845-15404888)
chr4 (300-343)||(15811899-15811942)
chr4 (300-343)||(19821029-19821072)
chr4 (178-249)||(25050141-25050212)
chr4 (300-343)||(26060818-26060861)
chr4 (300-343)||(56195842-56195885)
chr4 (309-343)||(5681741-5681775)
chr4 (178-264)||(22119614-22119700)
chr4 (178-264)||(24925773-24925859)
chr4 (309-343)||(56199169-56199203)
chr4 (223-264)||(9288223-9288264)
chr4 (178-294)||(10320248-10320366)
chr4 (300-343)||(18860087-18860128)
[»] chr8 (22 HSPs)
chr8 (178-300)||(14977129-14977254)
chr8 (178-300)||(12956457-12956581)
chr8 (178-277)||(24120199-24120298)
chr8 (142-300)||(16054226-16054386)
chr8 (177-277)||(28901389-28901488)
chr8 (178-264)||(6358666-6358752)
chr8 (137-264)||(13081998-13082125)
chr8 (172-296)||(28902051-28902177)
chr8 (186-300)||(5570164-5570280)
chr8 (186-290)||(29047352-29047455)
chr8 (178-277)||(16052326-16052424)
chr8 (222-265)||(32239299-32239342)
chr8 (301-343)||(33883114-33883156)
chr8 (307-343)||(43681656-43681692)
chr8 (354-417)||(3604721-3604784)
chr8 (300-343)||(13097233-13097276)
chr8 (189-264)||(13530166-13530241)
chr8 (189-264)||(13619705-13619780)
chr8 (142-264)||(26882340-26882462)
chr8 (178-264)||(10866956-10867042)
chr8 (301-335)||(27805359-27805393)
chr8 (299-343)||(12820638-12820682)
[»] chr2 (21 HSPs)
chr2 (142-264)||(35707735-35707857)
chr2 (178-264)||(21505200-21505286)
chr2 (178-264)||(19949615-19949702)
chr2 (209-277)||(35031701-35031768)
chr2 (141-260)||(25473968-25474087)
chr2 (189-264)||(30998750-30998825)
chr2 (178-250)||(32619610-32619682)
chr2 (299-343)||(13971665-13971709)
chr2 (188-264)||(21843063-21843139)
chr2 (188-264)||(21844690-21844766)
chr2 (141-264)||(1733032-1733154)
chr2 (300-343)||(31427305-31427348)
chr2 (212-264)||(15829136-15829188)
chr2 (178-300)||(19541005-19541129)
chr2 (300-343)||(45454172-45454215)
chr2 (301-343)||(6827078-6827120)
chr2 (186-264)||(18116959-18117037)
chr2 (309-343)||(25820617-25820651)
chr2 (301-343)||(30720100-30720142)
chr2 (301-341)||(38460582-38460622)
chr2 (299-343)||(45457460-45457504)
[»] chr6 (14 HSPs)
chr6 (186-300)||(13759474-13759590)
chr6 (178-265)||(16387308-16387395)
chr6 (137-264)||(15574852-15574978)
chr6 (198-300)||(16527878-16527982)
chr6 (178-265)||(20495854-20495940)
chr6 (178-259)||(30355294-30355375)
chr6 (186-263)||(32930534-32930611)
chr6 (178-250)||(14924492-14924564)
chr6 (192-264)||(22262332-22262404)
chr6 (299-339)||(34390190-34390230)
chr6 (300-343)||(2773155-2773198)
chr6 (178-277)||(26512826-26512924)
chr6 (178-277)||(26517942-26518040)
chr6 (227-264)||(17198816-17198853)
[»] chr7 (28 HSPs)
chr7 (154-300)||(22067829-22067977)
chr7 (178-277)||(29544487-29544585)
chr7 (141-259)||(315116-315234)
chr7 (188-277)||(23124878-23124966)
chr7 (198-300)||(1255236-1255340)
chr7 (178-264)||(20470871-20470957)
chr7 (178-259)||(9385456-9385537)
chr7 (144-271)||(7815257-7815383)
chr7 (197-292)||(9066119-9066214)
chr7 (300-343)||(48645779-48645822)
chr7 (186-264)||(20446215-20446293)
chr7 (299-343)||(4595767-4595811)
chr7 (142-277)||(7142030-7142164)
chr7 (137-264)||(21471724-21471851)
chr7 (367-415)||(26808560-26808608)
chr7 (365-437)||(30057982-30058054)
chr7 (189-265)||(30405575-30405651)
chr7 (176-254)||(7494677-7494755)
chr7 (301-343)||(11397820-11397862)
chr7 (299-341)||(30057911-30057953)
chr7 (228-277)||(21545848-21545896)
chr7 (142-264)||(2632497-2632619)
chr7 (222-264)||(2351009-2351051)
chr7 (301-343)||(4695793-4695835)
chr7 (309-343)||(17731132-17731166)
chr7 (365-415)||(22952784-22952834)
chr7 (222-259)||(28952005-28952042)
chr7 (300-343)||(44363685-44363726)
[»] chr1 (24 HSPs)
chr1 (142-300)||(12423937-12424097)
chr1 (178-264)||(12810290-12810376)
chr1 (144-299)||(26657410-26657567)
chr1 (142-264)||(8247718-8247840)
chr1 (182-277)||(23223383-23223478)
chr1 (141-259)||(23519821-23519940)
chr1 (137-264)||(21451877-21452003)
chr1 (187-300)||(50047158-50047273)
chr1 (189-300)||(11770017-11770130)
chr1 (178-264)||(34381676-34381762)
chr1 (142-277)||(30675415-30675550)
chr1 (186-265)||(24903355-24903434)
chr1 (185-264)||(30781735-30781814)
chr1 (178-264)||(25730632-25730718)
chr1 (300-343)||(21110912-21110955)
chr1 (300-343)||(42022955-42022998)
chr1 (178-264)||(25266406-25266491)
chr1 (222-264)||(25494540-25494582)
chr1 (222-277)||(21550928-21550982)
chr1 (351-417)||(2733517-2733583)
chr1 (301-343)||(8435444-8435486)
chr1 (301-343)||(29642986-29643028)
chr1 (187-264)||(18795158-18795235)
chr1 (299-343)||(34732099-34732143)
[»] chr5 (28 HSPs)
chr5 (179-264)||(17382096-17382181)
chr5 (178-300)||(18222461-18222585)
chr5 (146-264)||(12340075-12340191)
chr5 (137-277)||(24841680-24841819)
chr5 (178-264)||(24517322-24517408)
chr5 (178-264)||(25594753-25594839)
chr5 (141-277)||(15205576-15205709)
chr5 (141-227)||(22229740-22229826)
chr5 (141-300)||(25680527-25680688)
chr5 (182-250)||(30072150-30072218)
chr5 (142-264)||(22967903-22968025)
chr5 (178-264)||(17027495-17027581)
chr5 (301-341)||(7625421-7625461)
chr5 (178-264)||(11274391-11274478)
chr5 (202-277)||(16634038-16634112)
chr5 (300-343)||(30066636-30066679)
chr5 (301-343)||(4099291-4099333)
chr5 (172-264)||(17695459-17695551)
chr5 (303-343)||(36357065-36357105)
chr5 (178-261)||(16622731-16622813)
chr5 (301-343)||(7271343-7271385)
chr5 (301-343)||(17944946-17944988)
chr5 (301-343)||(18239268-18239310)
chr5 (301-343)||(21332440-21332482)
chr5 (178-264)||(23157849-23157935)
chr5 (223-264)||(24410990-24411031)
chr5 (187-264)||(26330129-26330206)
chr5 (296-343)||(32838192-32838240)
[»] chr3 (27 HSPs)
chr3 (141-300)||(1475303-1475464)
chr3 (178-300)||(13911233-13911357)
chr3 (178-265)||(33914622-33914709)
chr3 (226-300)||(18065832-18065905)
chr3 (178-264)||(21017845-21017931)
chr3 (186-300)||(11521116-11521231)
chr3 (178-264)||(12409426-12409512)
chr3 (178-259)||(19219277-19219358)
chr3 (137-264)||(8402611-8402738)
chr3 (178-253)||(25919536-25919611)
chr3 (186-264)||(4780748-4780825)
chr3 (178-264)||(10341764-10341849)
chr3 (144-300)||(12573224-12573382)
chr3 (144-300)||(13549688-13549846)
chr3 (186-294)||(25883079-25883189)
chr3 (300-343)||(30219750-30219793)
chr3 (238-300)||(27415199-27415260)
chr3 (187-264)||(21829193-21829270)
chr3 (300-343)||(19304444-19304487)
chr3 (222-265)||(21813498-21813541)
chr3 (222-300)||(26297761-26297841)
chr3 (301-343)||(9158315-9158357)
chr3 (301-343)||(16244283-16244325)
chr3 (309-343)||(55034681-55034715)
chr3 (222-262)||(19263961-19264001)
chr3 (307-343)||(25260996-25261032)
chr3 (307-343)||(52309380-52309416)
[»] scaffold1657 (1 HSPs)
scaffold1657 (351-437)||(282-368)
[»] scaffold0171 (2 HSPs)
scaffold0171 (178-300)||(21365-21489)
scaffold0171 (178-264)||(6164-6250)
[»] scaffold0330 (1 HSPs)
scaffold0330 (299-343)||(14249-14293)
[»] scaffold0045 (1 HSPs)
scaffold0045 (300-343)||(90085-90128)
[»] scaffold0002 (1 HSPs)
scaffold0002 (141-263)||(446936-447058)
[»] scaffold1063 (1 HSPs)
scaffold1063 (301-343)||(2812-2854)
[»] scaffold0520 (1 HSPs)
scaffold0520 (301-343)||(1304-1346)
[»] scaffold0080 (1 HSPs)
scaffold0080 (301-343)||(27436-27478)
[»] scaffold0757 (1 HSPs)
scaffold0757 (300-343)||(5677-5720)
[»] scaffold0282 (1 HSPs)
scaffold0282 (178-264)||(22606-22692)
[»] scaffold0134 (1 HSPs)
scaffold0134 (300-343)||(7562-7605)
[»] scaffold1809 (1 HSPs)
scaffold1809 (301-343)||(389-431)
[»] scaffold0496 (1 HSPs)
scaffold0496 (351-416)||(10188-10253)
[»] scaffold0043 (1 HSPs)
scaffold0043 (223-264)||(58758-58799)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 56 - 461
Target Start/End: Original strand, 4953528 - 4953935
Alignment:
Q  56 aaggagtgatttaaaaatgctaaaagtggttatggaattagggtttgatatttcaagaccaataatttattgatcttgtgtggttttgatgacagagtat 155  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4953528 aaggagtgatttaaaaatgttaaaagtggttatggaattagggtttgataattcaagatcaataatttattgatcttgtgtggttttgatgacagagtat 4953627  T
Q  156 catatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4953628 catatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatggtttgaggaacatattg 4953727  T
Q  256 tattgtttttcactcgattcgtaattcaattttatcctatatcattgataaacttttagcaagtatac-taaaaatgcatcgaagtaat-nnnnnnntcg 353  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||        |||    
T  4953728 tattg-ttttcactcaattcgtaattcagttttatcctatatcattgataaacttttaacaagtatacttaaaaatgcatcgaagtgataaaaaaaatcg 4953826  T
Q  354 tctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatggaggatatgtagagaatatatctaattttccccacaa 453  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  4953827 tctccacaagaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatggaggatatgtagagaatatatctaatttgccccgcaa 4953926  T
Q  454 -tcactcca 461  Q
     ||||||||    
T  4953927 ctcactcca 4953935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 459 - 587
Target Start/End: Original strand, 4954981 - 4955110
Alignment:
Q  459 ccaacttcacaatctcaacaaaacctttttatatacgaaaacagttacaaaaagcagtagcattccacggcctggttgagg-ttttctttcttcgttagt 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||| ||||||    
T  4954981 ccaacttcacaatctcaacaaaacctttttatatacgaaaacagtaacaaaaagcagtagcattccacggtctggttggggtttttctttctttgttagt 4955080  T
Q  558 ccccttttttatttccaagtataaaaacat 587  Q
    |||||||||||||||||||| |||||||||    
T  4955081 ccccttttttatttccaagtttaaaaacat 4955110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 25315415 - 25315292
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    |||||||| ||| ||||||||||||| |   ||||| |||||||| ||||||||  ||||||||| |||||||||| |||||||||||||||| |||| |    
T  25315415 ttgatgaccgagcatcatatgacattttagttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaatgct 25315316  T
Q  241 ttgaggaacatattgtattgtttt 264  Q
    ||||||||||||||||||||||||    
T  25315315 ttgaggaacatattgtattgtttt 25315292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 1676442 - 1676318
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcga---tt 274  Q
    |||| ||| ||||||||  ||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||| || ||||   ||    
T  1676442 tttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgtttt-cattcgagtttt 1676344  T
Q  275 cgtaattcaattttatcctatatcat 300  Q
     |||||||||||||||||||||||||    
T  1676343 tgtaattcaattttatcctatatcat 1676318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 1682970 - 1682846
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcga---tt 274  Q
    |||| ||| ||||||||  ||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||| || ||||   ||    
T  1682970 tttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgtttt-cattcgagtttt 1682872  T
Q  275 cgtaattcaattttatcctatatcat 300  Q
     |||||||||||||||||||||||||    
T  1682871 tgtaattcaattttatcctatatcat 1682846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 142 - 300
Target Start/End: Original strand, 27302710 - 27302870
Alignment:
Q  142 tgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtt 241  Q
    |||||||| || ||||||| ||||| ||| ||||| ||||| || ||||| ||| ||||||||| ||||| ||||  |||||||| |||||| |||||||    
T  27302710 tgatgacaaagcatcatataacattttgactatgttttttaataattttcgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtt 27302809  T
Q  242 tgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 300  Q
    |||||||||| |||||||| ||||||||||| ||   ||||||||||| ||| ||| |||||    
T  27302810 tgaggaacattttgtattg-ttttcactcgagtcattgtaattcaattatatactagatcat 27302870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 9783165 - 9783044
Alignment:
Q  143 gatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtt 241  Q
    |||||||||| ||||||||||||| ||  ||||| |||||||| |||||||||  ||||||||  |||| ||||| ||| |||||||||||| ||| |||    
T  9783165 gatgacagagcatcatatgacattttgcctatgt-ttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtt 9783067  T
Q  242 tgaggaacatattgtattgtttt 264  Q
    |||||||||||||||||||||||    
T  9783066 tgaggaacatattgtattgtttt 9783044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 12111477 - 12111360
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 275  Q
    |||||||| |||| |||| ||||||||| ||| |||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||      
T  12111477 ttttagtacttttatttgcatttgaagacaaa-aagatgaga-atagaggagttgtcaatggtttgaggaacatattgtattttttttcacacgagtcgt 12111380  T
Q  276 -gtaattcaattttatccta 294  Q
     |||||||| ||||||||||    
T  12111379 tgtaattcacttttatccta 12111360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 34864438 - 34864322
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcg--attc 275  Q
    |||||||| ||||||||||||||||||| |||||||||   || |||||||||||| ||||||||||||||| |||  ||||| ||||||||||  |||     
T  34864438 ttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaacgtatcatattg-ttttcactcgtcatt- 34864341  T
Q  276 gtaattcaattttatccta 294  Q
    |||||||| ||||||||||    
T  34864340 gtaattcacttttatccta 34864322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 5906867 - 5906781
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| |||| |||| ||||||||| ||| |||||| ||| ||||||| |||| |||||||||||||||||||| |||||||||    
T  5906867 ttttagtacttttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgtttt 5906781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 18897959 - 18898045
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||| || ||||||||| ||||||||| ||||||| || |||||||| || |||| |||||||| |||||||||||||||||||||    
T  18897959 ttttactacttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacatattgtattgtttt 18898045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 15192171 - 15192257
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||| ||| ||||||||| ||||||||| |||||||||| ||||  | ||||||||||||  |||| ||||||||||||||||||||    
T  15192171 ttttcgtacttttctttgcatttgaagacaaataagatgagagacgggggagttgttaattttttgtggaacatattgtattgtttt 15192257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 26703234 - 26703278
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  26703234 attgatagacttttagcaagtatactaaaaatgcatcaaagtaat 26703278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 3797579 - 3797621
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  3797579 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 3797621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 40795369 - 40795327
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  40795369 tgataaacttttagcaagtgtactaaaaatgtatcgaagtaat 40795327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 15404845 - 15404888
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||    
T  15404845 ttgatagacttttagcaagtgtactaaatatgcatcgaagtaat 15404888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 15811899 - 15811942
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| || |||||||||| |||||||||||||||||||||||    
T  15811899 ttgatagacctttagcaagtgtactaaaaatgcatcgaagtaat 15811942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 19821072 - 19821029
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  19821072 ttgatatacttttagcaagtgtactaaaaatgtatcgaagtaat 19821029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 25050212 - 25050141
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaac 249  Q
    ||||||||||||| |||||||||||||| ||||||||||  || ||||| | || | || ||||||||||||    
T  25050212 ttttagtatttttatttgtatttgaagacaaataagatgaaagttagagaaattatcaacggtttgaggaac 25050141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 26060861 - 26060818
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  26060861 ttgatagacttttagcaagtgtactaaaaatgtatcgaagtaat 26060818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 56195885 - 56195842
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| | ||||||||||| |||||||||||||||||||||||    
T  56195885 ttgatagatttttagcaagtgtactaaaaatgcatcgaagtaat 56195842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 5681775 - 5681741
Alignment:
Q  309 ttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||| |||||||||||||||||||||||    
T  5681775 ttttagcaagtgtactaaaaatgcatcgaagtaat 5681741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 22119614 - 22119700
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||  ||||||||| ||||||||  |||| ||| || |  || ||||||||| |||||||||||||||| |||||| ||||||    
T  22119614 ttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaacaaattgtaatgtttt 22119700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 24925773 - 24925859
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||  |||| |||||||||||||| |||||||| || |  || | ||||||| ||| ||||||| ||||| ||||||||||||    
T  24925773 ttttagttattttatttgtatttgaagataaataagaagtcatttaaaagagttgtcaatcgtttgagtaacattttgtattgtttt 24925859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 56199203 - 56199169
Alignment:
Q  309 ttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||| |||||||||||||||||||||||    
T  56199203 ttttagcaagtgtactaaaaatgcatcgaagtaat 56199169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 9288223 - 9288264
Alignment:
Q  223 agaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||||| | |||||||||||||||| |||||||||||||    
T  9288223 agaggagttttcaatggtttgaggaacaaattgtattgtttt 9288264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 10320366 - 10320248
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 275  Q
    |||||||| ||||||||  ||||||||| ||| ||| |  | | |||| ||||||||||| ||| ||| |||||||||||||  ||||||||||| ||      
T  10320366 ttttagtaattttctttccatttgaagataaaaaagtttagcggtagacgagttgttaatagttagagaaacatattgtatt-cttttcactcgagtcgt 10320268  T
Q  276 -gtaattcaattttatccta 294  Q
     |||||||| ||||||||||    
T  10320267 tgtaattcacttttatccta 10320248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 18860128 - 18860087
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  18860128 ttgataaacttttagcaagtgtactaaaaat--atcgaagtaat 18860087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 14977254 - 14977129
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 275  Q
    |||||| | ||||||||| |||| |||| |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||      
T  14977254 ttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcat 14977155  T
Q  276 -gtaattcaattttatcctatatcat 300  Q
     |||||||| |||||||||| |||||    
T  14977154 tgtaattcacttttatcctaaatcat 14977129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 12956457 - 12956581
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcga---tt 274  Q
    |||||||| ||||||||| ||||||||| |||||||||| ||| |||||||||||| |||||||||||||| ||||||||||| |||||||||||    |    
T  12956457 ttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattg-ttttcactcgagtcat 12956555  T
Q  275 cgtaattcaattttatcctatatcat 300  Q
    ||||||||| |||||||||| |||||    
T  12956556 cgtaattcacttttatcctaaatcat 12956581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 24120199 - 24120298
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||| || ||||||||||| |||||||||| |||||||| | ||||||    
T  24120199 ttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaatatattgtattttttttcacccaattcgt 24120298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 142 - 300
Target Start/End: Original strand, 16054226 - 16054386
Alignment:
Q  142 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||||||||| ||||||||||||| ||  ||||||||| |||| |||||||||| ||||||||| |||||||||  ||| |||||||||||| |||| |    
T  16054226 tgatgacagagcatcatatgacattttggctatgtcttt-agtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatgat 16054324  T
Q  241 ttgaggaacatattgtattgtttttcactcga---ttcgtaattcaattttatcctatatcat 300  Q
    || |||||||| |||||||| |||||||||||    | |||||||| |||||||||| |||||    
T  16054325 ttaaggaacattttgtattg-ttttcactcgagttgttgtaattcatttttatcctagatcat 16054386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 28901488 - 28901389
Alignment:
Q  177 cttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcg 276  Q
    |||||| || ||||||||| ||||||| | ||||||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||    
T  28901488 cttttaatacttttctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattg-ttttcactcgagtcg 28901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 6358666 - 6358752
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| |||| |||| ||||||||| | ||||| || |||||||||||||||||||||||||| | ||||||||||||||||||    
T  6358666 ttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgtattgtttt 6358752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 13082125 - 13081998
Alignment:
Q  137 ggttttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 235  Q
    |||| |||||||| |  ||||||||||||| ||| ||||| |||||||| |||||||||| ||||||||| |||||||||| ||| |||||||||||| |    
T  13082125 ggttgtgatgacaaaacatcatatgacattttgattatgt-ttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtca 13082027  T
Q  236 atggtttgaggaacatattgtattgtttt 264  Q
    ||| |||||| ||||  ||||| ||||||    
T  13082026 atgatttgagaaacacgttgtagtgtttt 13081998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 296
Target Start/End: Original strand, 28902051 - 28902177
Alignment:
Q  172 tatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcg 271  Q
    ||||| |||||||| |||| |||| ||||  ||  || |||||||  ||||||||||||| ||||||||||||| |||||||||||||| |||||| |||    
T  28902051 tatgttttttagtacttttatttgcatttataggcaagtaagatgatagatagaggagttattaatggtttgagaaacatattgtattg-ttttcattcg 28902149  T
Q  272 attc---gtaattcaattttatcctata 296  Q
    | ||   |||||||| ||||||||||||    
T  28902150 agtcgttgtaattcacttttatcctata 28902177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 5570280 - 5570164
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcga---ttcgtaattc 282  Q
    ||||| |||| ||||||||| |||||||||| ||  |  ||||||||| |||  ||||||||||||||||||||| |||||||||||    | |||||||    
T  5570280 tttttttttgcatttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaacatattgtattg-ttttcactcgagttgttgtaattc 5570182  T
Q  283 aattttatcctatatcat 300  Q
    | ||||||||||||||||    
T  5570181 acttttatcctatatcat 5570164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 29047455 - 29047352
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattc 282  Q
    |||||||||| ||||||| | |||||||||| ||| |||||||||||| ||||||   ||||||| ||||||||| ||||||||||| ||   |||||||    
T  29047455 tttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt---aggaacacattgtattg-ttttcactcgagtcactgtaattc 29047360  T
Q  283 aattttat 290  Q
    ||||||||    
T  29047359 aattttat 29047352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 16052424 - 16052326
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||||||| |||| |||| |||||| || |||||| ||| ||| |||||||||||| ||||||||||  |||||||| || || ||||||||||| ||||    
T  16052424 ttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttgaataacatattttaatg-ttttcactcgagtcgt 16052326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 32239299 - 32239342
Alignment:
Q  222 tagaggagttgttaatggtttgaggaacatattgtattgttttt 265  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  32239299 tagaggagttgtcaatggtttgagtaacatattgtattgttttt 32239342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 33883114 - 33883156
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  33883114 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 33883156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 43681656 - 43681692
Alignment:
Q  307 acttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43681656 acttttagcaagtgtactaaaaatgcatcgaagtaat 43681692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 417
Target Start/End: Original strand, 3604721 - 3604784
Alignment:
Q  354 tctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatgg 417  Q
    |||||| ||| ||||||||||| |||||||| ||||||||||   || ||||||||||||||||    
T  3604721 tctccataaagattgtttcaatctcaactcggcaatttaattacgattaggatttaacaaatgg 3604784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 13097276 - 13097233
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  13097276 ttgataaacttttagcaagtgtactaaaaatatatcgaagtaat 13097233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 13530241 - 13530166
Alignment:
Q  189 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||| | ||||||| |||||||| || |  |||||||| |||  |||||||||||||||| ||||||||||||    
T  13530241 ttctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgtttt 13530166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 13619780 - 13619705
Alignment:
Q  189 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||| | ||||||| |||||||| || |  |||||||| |||  |||||||||||||||| ||||||||||||    
T  13619780 ttctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgtttt 13619705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 26882340 - 26882462
Alignment:
Q  142 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||||||||||||||||||||||  ||  ||||| |||||||| |||||||| | | | ||||| |||||| ||| ||  || ||||||||  ||||||    
T  26882340 tgatgacagagtatcatatgacatcttggctatgt-ttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggt 26882438  T
Q  241 ttgaggaacatattgtattgtttt 264  Q
    || |||| |||| |||||||||||    
T  26882439 ttaaggagcataatgtattgtttt 26882462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 10866956 - 10867042
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||  ||||||||| ||| ||||  |||||||| || |  ||||| |||||| |||||||||||||| || ||||||||||||    
T  10866956 ttttagttattttctttgaattcgaaggcaaataagaggtcatttagagtagttgtcaatggtttgaggaatattttgtattgtttt 10867042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 335
Target Start/End: Original strand, 27805359 - 27805393
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatc 335  Q
    ||||||||||||||||||| |||||||||||||||    
T  27805359 tgataaacttttagcaagtgtactaaaaatgcatc 27805393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 12820638 - 12820682
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||||| | ||||||||  |||||||||||    
T  12820638 attgataaacttttagcaagtgtgctaaaaatatatcgaagtaat 12820682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 35707735 - 35707857
Alignment:
Q  142 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||||| ||||||    
T  35707735 tgatgacagagcatcatatgacattttgactatgt-ttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggt 35707833  T
Q  241 ttgaggaacatattgtattgtttt 264  Q
    ||||| ||||| ||||||||||||    
T  35707834 ttgagaaacatgttgtattgtttt 35707857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 21505286 - 21505200
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||| ||||||||||||| ||||||||||||||||    
T  21505286 ttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattgtattgtttt 21505200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 19949702 - 19949615
Alignment:
Q  178 ttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| |||||||||||||||||||| |||||| ||| ||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  19949702 ttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaacatattgtattatttt 19949615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 35031701 - 35031768
Alignment:
Q  209 ataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  35031701 ataagatgagagatagaggagttgttaatggtttgaggaacatattgtattg-ttttcactcgagtcgt 35031768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 25473968 - 25474087
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagtat-ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 239  Q
    |||||||||||| ||||||||||||| ||  ||||| ||||||||  |||| |||  ||||||||| |||||||||| ||| |||||||||||| ||| |    
T  25473968 ttgatgacagagcatcatatgacattttggctatgt-ttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattg 25474066  T
Q  240 tttgaggaacatattgtattg 260  Q
    |||||||||||||||| ||||    
T  25474067 tttgaggaacatattgaattg 25474087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 30998750 - 30998825
Alignment:
Q  189 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||  |||||||| |||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgtttt 30998825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 32619610 - 32619682
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaaca 250  Q
    |||||||| ||||||||| ||||||||| ||||||  || |||||||||||||||||||||||| ||||||||    
T  32619610 ttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaaca 32619682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 13971665 - 13971709
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  13971665 attgataaacttttagcaagtgtactaaaaatgcatcgaagtaat 13971709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 21843139 - 21843063
Alignment:
Q  188 tttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| ||||||||| ||||||| ||| |  |||||||||||  |||||||| |||||||| ||||||||||||    
T  21843139 tttctttgcatttgaagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtattgtttt 21843063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 21844766 - 21844690
Alignment:
Q  188 tttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| ||||||||| ||||||| ||| |  |||||||||||| |||||||| |||||||| || |||||||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaacatgttatattgtttt 21844690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 264
Target Start/End: Original strand, 1733032 - 1733154
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||| ||| || ||||||||||||| |   ||||| |||||||| |||| |||  ||||||||| |||| ||||| ||| |||||||||||| ||||      
T  1733032 ttgataacaaagcatcatatgacattttagttatgt-ttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgag 1733130  T
Q  241 ttgaggaacatattgtattgtttt 264  Q
    ||||| |||| |||||||||||||    
T  1733131 ttgagaaacaaattgtattgtttt 1733154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 31427305 - 31427348
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  31427305 ttgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 31427348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 15829136 - 15829188
Alignment:
Q  212 agatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||| ||| |||||||||||| |||||||||||||||  |||||||||||||    
T  15829136 agatgagagttagaggagttgtcaatggtttgaggaacgcattgtattgtttt 15829188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 19541005 - 19541129
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 275  Q
    |||||||  ||||||||| ||||||||  |||| |||  | | ||| ||||||||||||||||||||||||| | ||||||| | ||||| |||| ||      
T  19541005 ttttagttattttctttgcatttgaaggaaaattagaatttatatataggagttgttaatggtttgaggaactttttgtatt-tatttcaatcgagtcat 19541103  T
Q  276 -gtaattcaattttatcctatatcat 300  Q
     |||||||| |||||||||| |||||    
T  19541104 tgtaattcagttttatcctaaatcat 19541129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 45454215 - 45454172
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||    
T  45454215 ttgatagacttttagcaagtgtactaaatatgcatcgaagtaat 45454172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 6827120 - 6827078
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||| |||||||| |||||| |||||||    
T  6827120 tgataaacttttagcaagtgtactaaaattgcatcaaagtaat 6827078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 18116959 - 18117037
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||| |||||||||||||| |||| ||| || |  ||||||| ||| | ||||||||| |||||| ||||||||||||    
T  18116959 tttttttttgtatttgaagacaaatgagaggtcatttagaggatttggtcatggtttgacgaacattttgtattgtttt 18117037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 25820617 - 25820651
Alignment:
Q  309 ttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||| |||||||||||||||||||||||    
T  25820617 ttttagcaagtgtactaaaaatgcatcgaagtaat 25820651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 30720142 - 30720100
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  30720142 tgataaacttttagcaagtgtactaaaaatatatcgaagtaat 30720100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 38460582 - 38460622
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagta 341  Q
    ||||| ||||||||||||| |||||||||| ||||||||||    
T  38460582 tgatagacttttagcaagtgtactaaaaatacatcgaagta 38460622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 45457504 - 45457460
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||| | ||||||||||| ||||||| |||||||||||||||    
T  45457504 attgatagatttttagcaagtgtactaaatatgcatcgaagtaat 45457460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 13759590 - 13759474
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattc 282  Q
    ||||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||   |||||||    
T  13759590 tttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatattgaattg-ttttcactcgaatcgttgtaattc 13759492  T
Q  283 aattttatcctatatcat 300  Q
    |||||||| |||||||||    
T  13759491 aattttattctatatcat 13759474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 16387395 - 16387308
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 265  Q
    |||||||| |||||||||| ||||||||  |||||||||| |  |||| ||||||| ||||||||||||||  |||||||||||||||    
T  16387395 ttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgaggaatttattgtattgttttt 16387308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 15574852 - 15574978
Alignment:
Q  137 ggttttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 235  Q
    |||| ||||||||||  ||||||||||||| ||  ||| | | |||||| |||||||||| ||||||||| |||||||||| ||  ||||||| |||| |    
T  15574852 ggttatgatgacagaacatcatatgacattttggctatct-tgttagtactttttctttgcatttgaagacaaataagatgagatttagaggaattgtca 15574950  T
Q  236 atggtttgaggaacatattgtattgtttt 264  Q
    || ||||||||||||| || |||||||||    
T  15574951 at-gtttgaggaacatgttatattgtttt 15574978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 16527878 - 16527982
Alignment:
Q  198 tttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatccta 294  Q
    |||||||| |||||||||| ||| ||||||||||||   ||||||||| | |||||| ||||| ||||||||||| ||   |||||||| ||||||||||    
T  16527878 tttgaagacaaataagatgagagttagaggagttgtcggtggtttgagtaccatattatattg-ttttcactcgagtcgttgtaattcatttttatccta 16527976  T
Q  295 tatcat 300  Q
     |||||    
T  16527977 gatcat 16527982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 20495940 - 20495854
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 265  Q
    |||||||| ||||||||||||||||||  || ||||| || | |||||| |||| | ||||||||||||||||| ||| |||||||||    
T  20495940 ttttagtaattttctttgtatttgaaggcaattaagaggtcatatagagaagttatcaatggtttgaggaacattttg-attgttttt 20495854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 30355294 - 30355375
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtatt 259  Q
    |||||||| ||||  ||| ||||||||  |||||||||| ||| ||||| |||||| ||||||||||  |||||||||||||    
T  30355294 ttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttgataaacatattgtatt 30355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 32930611 - 32930534
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttt 263  Q
    ||||| |||| ||||||||  ||||||||||| |  |||||||||||| ||||||||| ||||||| |||| ||||||    
T  32930611 tttttttttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgttttgttt 32930534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 14924564 - 14924492
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaaca 250  Q
    |||||||  ||||||||| ||||||||  |||||| |||| |  |||||||||||| ||||||||||||||||    
T  14924564 ttttagttattttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaaca 14924492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 22262332 - 22262404
Alignment:
Q  192 tttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| ||||| |||||||| || |  |||||||||||| ||||||||||| || |||||||||| ||||    
T  22262332 tttgtattcgaagacaaataagaagtaatttagaggagttgtcaatggtttgagaaaaatattgtattatttt 22262404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 34390190 - 34390230
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaag 339  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  34390190 attgatacacttttagcaagtatactaaaaatgcattgaag 34390230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 2773155 - 2773198
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  2773155 ttgatagacttttagcaagtgtactaaaaatgaatcgaagtaat 2773198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 26512924 - 26512826
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||||||  |||| |||| ||||||||  |||||||| || |  |||||||||||| ||||||||| | ||||| |||||||| |||||| |||||||||    
T  26512924 ttttagttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattg-ttttcattcgattcgt 26512826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 26518040 - 26517942
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||||||  |||| |||| ||||||||  |||||||| || |  |||||||||||| ||||||||| | ||||| |||||||| |||||| |||||||||    
T  26518040 ttttagttattttgtttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattg-ttttcattcgattcgt 26517942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 17198853 - 17198816
Alignment:
Q  227 gagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  17198853 gagttgttaatggtttgaggaactttttgtattgtttt 17198816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 22067977 - 22067829
Alignment:
Q  154 atcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacata 252  Q
    ||||||||||||| ||  ||||| |||||||| ||||| |||| ||||||||| |||||||||| ||| || ||||||||| ||||||||||||||||||    
T  22067977 atcatatgacattttggctatgt-ttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacata 22067879  T
Q  253 ttgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 300  Q
     ||||||| ||||||||||| ||   ||||||||||||||||||| |||||    
T  22067878 atgtattg-ttttcactcgagtcattgtaattcaattttatcctagatcat 22067829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 29544487 - 29544585
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    ||||| || ||||||||| ||||||||| |||||||||| ||| |||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||    
T  29544487 ttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtattg-ttttcactcgagtcgt 29544585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 315116 - 315234
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 239  Q
    ||||||| |||||||||||||| ||| ||| ||||| |||  ||| ||||||||  |||||||||| |||||||||| ||| |||||||||||| |||||    
T  315116 ttgatgatagagtatcatatgatattttgactatgt-tttcggtactttttcttaatatttgaagaaaaataagatgagagttagaggagttgtcaatgg 315214  T
Q  240 tttgaggaacatattgtatt 259  Q
    ||||| ||| ||||||||||    
T  315215 tttgaagaatatattgtatt 315234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 23124878 - 23124966
Alignment:
Q  188 tttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||||||  ||||||||| |||||||||| ||  |||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||    
T  23124878 tttctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtattg-ttttcactcgagtcgt 23124966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 1255340 - 1255236
Alignment:
Q  198 tttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatccta 294  Q
    |||||||| ||||||| || ||| |||||||||||| |||||||||||||| | ||||||||| ||||||||||| ||   |||||||| ||||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgtattg-ttttcactcgagtcattgtaattcatttttatccta 1255242  T
Q  295 tatcat 300  Q
     |||||    
T  1255241 aatcat 1255236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 20470957 - 20470871
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| |||| ||| ||| |||||| ||||||||||  |  |||||||||||| |||||||||||||||||||| |||||||||    
T  20470957 ttttagtacttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtttgaggaacatattatattgtttt 20470871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 9385456 - 9385537
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtatt 259  Q
    |||||| | ||||| ||| ||||||||| || ||||||| ||||||| ||||||||||||||||||| |||| |||||||||    
T  9385456 ttttagcacttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttgatgaacttattgtatt 9385537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 7815257 - 7815383
Alignment:
Q  144 atgacagagtatcatatgacattatgaatatgtcttttagtatttttct-ttgtatttgaagagaaataagatgtgagatagaggagttgttaatggttt 242  Q
    ||||||| ||||||||||| ||| ||  ||||| |||||||| |||| | ||| ||||||||| |||||||||| ||| || |||| |||| ||||||||    
T  7815257 atgacagggtatcatatgatattttggttatgt-ttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggttt 7815355  T
Q  243 gaggaacatattgtattgtttttcactcg 271  Q
     || ||||||||||||| |||||||||||    
T  7815356 aagaaacatattgtatt-tttttcactcg 7815383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 9066119 - 9066214
Alignment:
Q  197 atttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-gtaattcaattttatcc 292  Q
    ||||||||| ||||||| ||  |||||||| |||||| |||| ||| ||||||||||||||||| ||||||||||| || |||||||| ||||||||    
T  9066119 atttgaagacaaataagttgatagatagagaagttgtcaatgtttttaggaacatattgtattg-ttttcactcgagtcggtaattcacttttatcc 9066214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 48645822 - 48645779
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  48645822 ttgataaacttttagcaagtgtactaaaaatgcatcgaagtaat 48645779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 20446215 - 20446293
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||||| ||||||||| || ||||||| ||  |||||||||||| |||||||| || |||||||||| |||||||    
T  20446215 tttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacatattgttttgtttt 20446293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 4595767 - 4595811
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  4595767 attgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 4595811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 7142030 - 7142164
Alignment:
Q  142 tgatgacagagtatcatatgacattat-gaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||||||||| ||||||||||||| | |  ||||| ||||| || ||||||||| |||| |||| ||||||| || |||| | | ||||||| ||||||    
T  7142030 tgatgacagagcatcatatgacatttttggctatgt-ttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggt 7142128  T
Q  241 ttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    || ||||||||||| |||||  |||||||||| ||||    
T  7142129 ttaaggaacatattttattg-ctttcactcgagtcgt 7142164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 21471724 - 21471851
Alignment:
Q  137 ggttttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 235  Q
    |||| ||||||||||| |||||||| |||| ||  ||||| |||||||| |||||| ||| ||||||||| ||||||||||  |  ||||||| |||| |    
T  21471724 ggttgtgatgacagagcatcatatgccattttggttatgt-ttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtca 21471822  T
Q  236 atggtttgaggaacatattgtattgtttt 264  Q
    ||| ||| | ||||||||| |||||||||    
T  21471823 atgattttaagaacatattatattgtttt 21471851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 26808560 - 26808608
Alignment:
Q  367 tgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaat 415  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  26808560 tgtttcaatttctactcgacaatttaattataataaggatttaacaaat 26808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 437
Target Start/End: Original strand, 30057982 - 30058054
Alignment:
Q  365 attgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatggaggatatgtagagaatatat 437  Q
    ||||||||||| |||||||| |||||||||| |||| ||||||||||||||   || ||||||||| ||||||    
T  30057982 attgtttcaatctcaactcgacaatttaattataattaggatttaacaaataacgggtatgtagagcatatat 30058054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 30405575 - 30405651
Alignment:
Q  189 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 265  Q
    ||||||| ||||||||  |||| ||| || |  |||||||||||||||||||||||||||| | |||||||||||||    
T  30405575 ttctttgcatttgaaggtaaattagaagtcaattagaggagttgttaatggtttgaggaactttttgtattgttttt 30405651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 7494677 - 7494755
Alignment:
Q  176 tcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatatt 254  Q
    |||||||||| ||||||||| | ||||||| ||| | | || |||||| |  |||||||||||||||||||||||||||    
T  7494677 tcttttagtacttttctttgcacttgaagacaaacaggttgagagataaaatagttgttaatggtttgaggaacatatt 7494755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 11397820 - 11397862
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  11397820 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 11397862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 30057911 - 30057953
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaagta 341  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  30057911 attgataaacttttagcaagtgtattaaaaatgcatcgaagta 30057953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 21545896 - 21545848
Alignment:
Q  228 agttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  21545896 agttgtcaatggtttgaggaacatattgtattg-ttttcactcgagtcgt 21545848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 2632619 - 2632497
Alignment:
Q  142 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||||||||||||| ||||| ||| |   ||||| || ||||| |||||||||| |||| ||||  ||||  ||| ||| ||||||||||||| ||| |    
T  2632619 tgatgacagagtatcgtatgatatttttgttatgt-ttatagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatgat 2632521  T
Q  241 ttgaggaacatattgtattgtttt 264  Q
    || |||||||||||||||| ||||    
T  2632520 tttaggaacatattgtattatttt 2632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 2351009 - 2351051
Alignment:
Q  222 tagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||||||||| |||||||||| ||||| ||||||||||||    
T  2351009 tagaggagttgttcatggtttgagaaacattttgtattgtttt 2351051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 4695835 - 4695793
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| || ||||||||||||||||||||    
T  4695835 tgatagacttttagcaagtgtattaaaaatgcatcgaagtaat 4695793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 17731166 - 17731132
Alignment:
Q  309 ttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||| |||||||||||||||||||||||    
T  17731166 ttttagcaagtgtactaaaaatgcatcgaagtaat 17731132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 22952834 - 22952784
Alignment:
Q  365 attgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaat 415  Q
    ||||||||||| | |||| | |||||||||| |||||||||||||||||||    
T  22952834 attgtttcaatctaaacttgacaatttaattataataaggatttaacaaat 22952784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 28952042 - 28952005
Alignment:
Q  222 tagaggagttgttaatggtttgaggaacatattgtatt 259  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  28952042 tagaggagttgtttatggtttgaggaacatattttatt 28952005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 44363726 - 44363685
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  44363726 ttgataaacttttagcaagtgtactaaaaat--atcgaagtaat 44363685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 142 - 300
Target Start/End: Complemental strand, 12424097 - 12423937
Alignment:
Q  142 tgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||||||||| ||||||||| ||| ||  ||||| |||||||| |||||||||| ||||||||| |||||||||| |||| ||||| ||||||||||||    
T  12424097 tgatgacagagcatcatatgatattttggctatgt-ttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggt 12423999  T
Q  241 ttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 300  Q
    |||||||||||||  ||||| ||||||||||| ||   |||||||| ||||||| || |||||    
T  12423998 ttgaggaacatatgatattg-ttttcactcgagtcattgtaattcagttttatcttagatcat 12423937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 12810290 - 12810376
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| |||||||| ||||| |||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||    
T  12810290 ttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattgtttt 12810376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 144 - 299
Target Start/End: Original strand, 26657410 - 26657567
Alignment:
Q  144 atgacagagtatcatatgacattat-gaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggttt 242  Q
    |||||| |||||||||||| ||| | || ||||| ||||| || ||||||||| ||||||||| ||||| | || |||||||||||||||| ||||||||    
T  26657410 atgacatagtatcatatgatatttttgactatgt-ttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggttt 26657508  T
Q  243 gaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatca 299  Q
    |||||| ||| ||||||| ||||||||||||||   |||||||| |||||||||| ||||    
T  26657509 gaggaatataatgtattg-ttttcactcgattcgttgtaattcacttttatcctagatca 26657567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 8247840 - 8247718
Alignment:
Q  142 tgatgacagagtatcatatgacattatgaatatgtcttttagtat-ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||||||||| ||||||||||||| ||| ||||| ||||| ||  ||||||||| ||||||||| |||||||||| ||| |||||||| | | ||||||    
T  8247840 tgatgacagagcatcatatgacattttgactatgt-ttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggt 8247742  T
Q  241 ttgaggaacatattgtattgtttt 264  Q
    |||||||||||||| |||| ||||    
T  8247741 ttgaggaacatattttattatttt 8247718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 23223383 - 23223478
Alignment:
Q  182 agtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||| ||||||||| ||||  ||| || ||||||| ||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  23223383 agtacttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaacacattgtattttttttcactcgattcgt 23223478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 23519940 - 23519821
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtctttt-agtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 239  Q
    ||||||||| || |||||||||| || ||| ||||| |||| |||| |||||||||  |||||||| ||||| |||| ||||||||  |||||||||| |    
T  23519940 ttgatgacaaagcatcatatgaccttttgactatgtttttttagtacttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatag 23519841  T
Q  240 tttgaggaacatattgtatt 259  Q
    ||||||||||||||||||||    
T  23519840 tttgaggaacatattgtatt 23519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 21452003 - 21451877
Alignment:
Q  137 ggttttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 235  Q
    |||| |||||||| || ||||||||||||| ||  ||||| ||||||||  ||||||||| ||||||||| |||||||||| |||||||| ||||||| |    
T  21452003 ggttgtgatgacatagcatcatatgacattttggctatgt-ttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtca 21451905  T
Q  236 atggtttgaggaacatattgtattgtttt 264  Q
    ||||| | |||||||||||||||| ||||    
T  21451904 atggtat-aggaacatattgtattatttt 21451877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 50047158 - 50047273
Alignment:
Q  187 ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattca 283  Q
    ||||||||| ||||||||| ||||||||||  |  |||||||||||| |||| |||||| |||||||||||||| ||||||||||| ||   ||||||||    
T  50047158 ttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattg-ttttcactcgagtcatggtaattca 50047256  T
Q  284 attttatcctatatcat 300  Q
     |||||||||| |||||    
T  50047257 cttttatcctaaatcat 50047273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 300
Target Start/End: Complemental strand, 11770130 - 11770017
Alignment:
Q  189 ttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattcaat 285  Q
    ||||||| ||||||||| |||||||||| ||| ||||| | |||| |||||||| ||||||||||||||||| ||||||||||  ||   |||||||| |    
T  11770130 ttctttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtattg-ttttcactcgtgtcgttgtaattcact 11770032  T
Q  286 tttatcctatatcat 300  Q
    ||||||||| |||||    
T  11770031 tttatcctaaatcat 11770017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 34381676 - 34381762
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||| || |||| |||| ||||||||  ||||||||||| |  ||||||||||||||||||||||| ||||||||| |||||||||    
T  34381676 ttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacatattatattgtttt 34381762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 30675415 - 30675550
Alignment:
Q  142 tgatgacagagtatcatatgacattatgaa-tatgtcttttagtatttttctttgt-atttgaagagaaataagatgtgagatagaggagttgttaatgg 239  Q
    ||||||||||| ||||||||||||| |    ||||| |||||| | |||||||| | ||||| ||| ||||||||||  |  |||||||||||| |||||    
T  30675415 tgatgacagagcatcatatgacattttttgctatgt-ttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatgg 30675513  T
Q  240 tttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  30675514 tttgaggaacatattgtattg-ttttcactcgagtcgt 30675550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 24903434 - 24903355
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 265  Q
    |||||||||| ||||||||| ||||| |||| ||  ||| |||||||| |||| |||||||||||||||||||| |||||    
T  24903434 tttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaacatattgtatttttttt 24903355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 30781735 - 30781814
Alignment:
Q  185 atttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||||||| ||||||||| |||||||||| ||| ||||||||||||| ||  ||| || || |||||||||||||||    
T  30781735 atttttctttgcatttgaagacaaataagatgagagttagaggagttgttgataattttagaaatatattgtattgtttt 30781814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 25730718 - 25730632
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| ||||||||| ||||||| | |||||||||| ||| |||||| | ||| ||||| ||||||| | ||||||||||||||    
T  25730718 ttttagtacttttctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgaggagcgtattgtattgtttt 25730632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 21110912 - 21110955
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  21110912 ttgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 21110955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 42022998 - 42022955
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  42022998 ttgataaacttttagcaaatatactaaaaatgcattgaagtaat 42022955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 25266491 - 25266406
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| ||||||||| ||||||||| | | |||||  ||||||||| |||||| |||||| |||  ||||||||||||||||||    
T  25266491 ttttagtacttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgtttt 25266406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 25494582 - 25494540
Alignment:
Q  222 tagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  25494582 tagaggagttgtcaatggtttgaggaacatattgtcttgtttt 25494540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 21550982 - 21550928
Alignment:
Q  222 tagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    ||||||||||||  |||||||||||||||| |||||||| |||||| |||||||||    
T  21550982 tagaggagttgtctatggtttgaggaacattttgtattg-ttttcattcgattcgt 21550928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 2733517 - 2733583
Alignment:
Q  351 tcgtctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatgg 417  Q
    |||||||||||   ||| ||||||| |||||| |  ||||||||| |||||||||||||||||||||    
T  2733517 tcgtctccacagtgattatttcaatctcaacttgaaaatttaattataataaggatttaacaaatgg 2733583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 8435486 - 8435444
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  8435486 tgataaacttttagcaagtgtactaaaaatatatcgaagtaat 8435444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 29642986 - 29643028
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||    
T  29642986 tgatagacttttagcaagtgtactaaaaatgcattgaagtaat 29643028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 18795158 - 18795235
Alignment:
Q  187 ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||||| ||||||||  |||||||| || |  ||||||| || | ||||||||||||||||| |||||| |||||    
T  18795158 ttttctttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtatcgtttt 18795235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 34732099 - 34732143
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||| ||||||||||| ||||||||||| | |||||||||    
T  34732099 attgataaatttttagcaagtgtactaaaaatgaaccgaagtaat 34732143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 17382181 - 17382096
Alignment:
Q  179 tttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||| |||| |||| ||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17382181 tttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttt 17382096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 18222461 - 18222585
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 275  Q
    ||||||||||||| ||| |||||||||| |||||||||| ||| |||| ||||||| ||||||||||| |||||||||||||| |||| |||||| ||      
T  18222461 ttttagtatttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtattg-ttttaactcgagtcat 18222559  T
Q  276 -gtaattcaattttatcctatatcat 300  Q
     |||||||| |||||||||| |||||    
T  18222560 tgtaattcacttttatcctaaatcat 18222585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 12340191 - 12340075
Alignment:
Q  146 gacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgag 245  Q
    ||||||| ||||||||||||| ||  ||||| |||||||||||| ||||| ||||||||| ||||||| || ||| |||||||||||| |||||||||||    
T  12340191 gacagagcatcatatgacattttggctatgt-ttttagtatttt-ctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgag 12340094  T
Q  246 gaacatattgtattgtttt 264  Q
    ||||||||| |||| ||||    
T  12340093 gaacatattatattatttt 12340075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 24841680 - 24841819
Alignment:
Q  137 ggttttgatgacagagtatcatatgacattatgaa-tatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 235  Q
    |||| ||||||||||| ||||||||||||| |    ||||| |||||||| | ||||||| ||||||||| ||||||| |  |||||||||||||| | |    
T  24841680 ggttgtgatgacagagcatcatatgacattttttgctatgt-ttttagtactattctttgcatttgaagacaaataagtttagagatagaggagttttca 24841778  T
Q  236 atggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  24841779 atggtttgaggaacatattgtattg-ttttcactcgagtcgt 24841819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 24517322 - 24517408
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||  ||| ||||| ||||||||| |||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||    
T  24517322 ttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgtttt 24517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 25594839 - 25594753
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| |||| |||| ||||||||| |||||||||| ||| ||||||| || | ||||||||||||||||||||||||||||||    
T  25594839 ttttagtacttttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgtattgtttt 25594753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 277
Target Start/End: Original strand, 15205576 - 15205709
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttc-tttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 239  Q
    |||||||||||| ||||||||| ||| ||| ||||| |||||||||||||  |||| |||| || | ||||||||||  || || ||||||||| | |||    
T  15205576 ttgatgacagagcatcatatgatattttgactatgt-ttttagtattttttatttgcatttaaatacaaataagatg--agttaaaggagttgtcagtgg 15205672  T
Q  240 tttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  15205673 tttgaggaacatattgtattg-ttttcactcgagtcgt 15205709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 22229740 - 22229826
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagagg 227  Q
    |||||||||||| |||||||| |||| ||  ||||| |||||||| ||||||||| ||||||||| |||||||||| ||||||||||    
T  22229740 ttgatgacagagcatcatatgtcattttggctatgttttttagtacttttctttgcatttgaagacaaataagatgagagatagagg 22229826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 300
Target Start/End: Original strand, 25680527 - 25680688
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    |||||||| ||| |||||| |||||| |   |||||||||||||| ||||||||  |  |||||| ||| |||||| ||| ||  ||| || | ||||||    
T  25680527 ttgatgaccgagcatcatacgacattttagctatgtcttttagtaattttctttaaacctgaagacaaaaaagatgagagttattggatttttcaatggt 25680626  T
Q  241 ttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 300  Q
    |||||||||||||||||||| ||||||||||| ||   ||||||||||||||| ||| |||||    
T  25680627 ttgaggaacatattgtattg-ttttcactcgagtcgttgtaattcaattttattctaaatcat 25680688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 30072150 - 30072218
Alignment:
Q  182 agtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaaca 250  Q
    |||| ||||||||| ||||||||| |||||||||| ||  |||||||||||| ||||||||||||||||    
T  30072150 agtacttttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 30072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 22968025 - 22967903
Alignment:
Q  142 tgatgacagagtatcatatgacattat-gaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggt 240  Q
    ||||||| ||||||||||||| ||| | |  ||||| |||||||| ||||||||| || | |||| ||||||||||     |||||||||||| ||||||    
T  22968025 tgatgacggagtatcatatgatattttaggctatgt-ttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggt 22967927  T
Q  241 ttgaggaacatattgtattgtttt 264  Q
    ||||||||||||||||| ||||||    
T  22967926 ttgaggaacatattgtactgtttt 22967903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 17027495 - 17027581
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| ||||||||| |||| |||| || ||||||| ||| |||||| || || || |||||||||||||||||| ||||||||    
T  17027495 ttttagtacttttctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaacatattgaattgtttt 17027581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 7625461 - 7625421
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagta 341  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  7625461 tgataaacttttagcaagtgtactaaaaatgcatcgaagta 7625421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 11274478 - 11274391
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgag-gaacatattgtattgtttt 264  Q
    |||||||| ||||||||| |||| ||||  ||||||||  ||||||||  |||||| |||||||||||  ||||||||||||||||||    
T  11274478 ttttagtacttttctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgagaaaacatattgtattgtttt 11274391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 16634038 - 16634112
Alignment:
Q  202 aagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgt 277  Q
    |||| |||||||||| ||| | || ||||||| ||||||||||| |||||||||||||| ||||||||||| ||||    
T  16634038 aagaaaaataagatgagagttggatgagttgtcaatggtttgagaaacatattgtattg-ttttcactcgagtcgt 16634112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 30066679 - 30066636
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  30066679 ttgataaacttttagcaaatgtactaaaaatgcatcgaagtaat 30066636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 4099291 - 4099333
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  4099291 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 4099333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 17695551 - 17695459
Alignment:
Q  172 tatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||| |||||||  ||||||||||||||| ||| |||||||| ||    || ||||||||| |||| ||||||||| || ||||||||||||    
T  17695551 tatgttttttagttattttctttgtatttggagataaataagaggtcgtttaaaggagttgtcaatgatttgaggaatattttgtattgtttt 17695459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 36357105 - 36357065
Alignment:
Q  303 ataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  36357105 ataaacttttaacaagtgtactaaaaatgcatcgaagtaat 36357065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 16622813 - 16622731
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgt 261  Q
    ||||||||||||| |||  ||||||||| ||||| ||   ||| || ||||||||| ||||||||||||||||| |||||||||    
T  16622813 ttttagtattttt-tttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaacatgttgtattgt 16622731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 7271385 - 7271343
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||    
T  7271385 tgatagacttttagcaagtgtactaaaaatgtatcgaagtaat 7271343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 17944988 - 17944946
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  17944988 tgataaacttttagcaagtgtactaaaaatatatcgaagtaat 17944946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 18239268 - 18239310
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||| || |||||||| |||||||||||    
T  18239268 tgataaacttttagcaagtgtattaaaaatgaatcgaagtaat 18239310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 21332440 - 21332482
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||    
T  21332440 tgatagacttttagcaagtgtactaaaaatgtatcgaagtaat 21332482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 23157935 - 23157849
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||  ||||||||| ||||||||  |||| ||| || |  |||||||||||| ||||||||||||||| | | ||||||||||    
T  23157935 ttttagttattttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaatggtttgaggaacttttggtattgtttt 23157849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 24411031 - 24410990
Alignment:
Q  223 agaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||||||| |||||||||||||| || ||||||||||||    
T  24411031 agaggagttgtcaatggtttgaggaaaattttgtattgtttt 24410990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 26330206 - 26330129
Alignment:
Q  187 ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||||| |||  |||| ||||||| || ||||| ||| |||||| |||||| | ||||| |||||||||||||||    
T  26330206 ttttctttgcattgtaagacaaataagttgagagatggagtagttgtcaatggtctaaggaatatattgtattgtttt 26330129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 32838240 - 32838192
Alignment:
Q  296 atcattgataaac-ttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||  ||||||||||| ||||||||||| |||||||||||    
T  32838240 atcattgataaatattttagcaagtgtactaaaaatgtatcgaagtaat 32838192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 141 - 300
Target Start/End: Complemental strand, 1475464 - 1475303
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 239  Q
    ||||||||| || ||||||||||||| ||  ||||| |||||||| |||||||||| ||||||||   ||||||||| ||| |||||||||| | |||||    
T  1475464 ttgatgacatagcatcatatgacattttggctatgt-ttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatgg 1475366  T
Q  240 tttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 300  Q
    ||||||||| ||||||||||  ||||||||||| ||   ||||||||||| ||||||| |||||    
T  1475365 tttgaggaatatattgtatt-attttcactcgagtcgttgtaattcaattatatcctagatcat 1475303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 13911233 - 13911357
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 275  Q
    |||||||| ||||||||||||||||||| || ||||  | |||||||| ||||||| ||||||||||||||||||| |||||| |||||||| || ||      
T  13911233 ttttagtaattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtttgaggaacatatggtattg-ttttcacttgaatcat 13911331  T
Q  276 -gtaattcaattttatcctatatcat 300  Q
     |||||||| |||||||||| |||||    
T  13911332 tgtaattcacttttatcctagatcat 13911357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 33914709 - 33914622
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgttttt 265  Q
    |||||||| ||||||||| |||| |||| |||||||||| ||| || ||||||||| || ||||||||||||||||||||||||||||    
T  33914709 ttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgttttt 33914622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 18065832 - 18065905
Alignment:
Q  226 ggagttgttaatggtttgaggaacatattgtattgtttttcactcgattcgtaattcaattttatcctatatcat 300  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||| |||||    
T  18065832 ggagttgtcaatggtttgagaaacatattgtattg-ttttcactcgagtcgtaattcacttttatcctaaatcat 18065905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 21017845 - 21017931
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||||||||||||| ||||||||| |||||||||| ||| |||||||||||  |||  ||||||||||||||| |||| ||||    
T  21017845 ttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattatttt 21017931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 11521116 - 11521231
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgatt--cgtaattca 283  Q
    |||||| ||| ||||||||| |||||||||| | | | |||||||||| ||||||||||||||||||||||||| ||||| ||| ||||   ||||||||    
T  11521116 tttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaacatattgtattattttt-acttgatttgtgtaattca 11521214  T
Q  284 attttatcctatatcat 300  Q
     |||||||||| |||||    
T  11521215 gttttatcctagatcat 11521231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 12409426 - 12409512
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| |||| |||||||||||||| ||||||  || |||||| | ||||||| |||||||||| |||||||||||||| ||||    
T  12409426 ttttagtacttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaacatattgtattatttt 12409512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 19219358 - 19219277
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtatt 259  Q
    ||||||||||||||||||  |||||||| |||||||||| ||| ||  |||||||| ||||||||||||| |||||| ||||    
T  19219358 ttttagtatttttctttgcttttgaagataaataagatgagagttattggagttgtcaatggtttgaggagcatattttatt 19219277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 8402738 - 8402611
Alignment:
Q  137 ggttttgatgacagagtatcatatgacattat-gaatatgtcttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgtta 235  Q
    |||| ||||||||||| ||||||||| ||| | || ||||| |||  ||||||  ||||| ||||||||  ||||||||||| |  |||||||||||| |    
T  8402738 ggttgtgatgacagagcatcatatgatattttagactatgtttttatgtattta-ctttgcatttgaaggcaaataagatgtaatttagaggagttgtca 8402640  T
Q  236 atggtttgaggaacatattgtattgtttt 264  Q
    |||||||||||||||  ||||||||||||    
T  8402639 atggtttgaggaacaatttgtattgtttt 8402611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 25919611 - 25919536
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatat 253  Q
    ||||||||  |||||||| ||||||||| |||||||||| ||| |||| || |||| |||||||||||||||||||    
T  25919611 ttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaacatat 25919536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 4780825 - 4780748
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||||||||||||| | |||| ||||  || ||||||||| | |||||||||||||| |||||||||||||||||    
T  4780825 tttttctttgtatttgaatacaaatgagataagatatagaggagctcttaatggtttgagg-acatattgtattgtttt 4780748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 10341764 - 10341849
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| |||||| || |||||||   |||||||||||||  |||||||||||| ||||| |||||||||| |||||||||||||    
T  10341764 ttttagtacttttctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatgg-ttgaggaacaaattgtattgtttt 10341849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 144 - 300
Target Start/End: Original strand, 12573224 - 12573382
Alignment:
Q  144 atgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggttt 242  Q
    |||||| || ||||||||||||| ||  ||||| |||||||| |||||||||| ||| ||||| |||||||||| ||| |||| || |||| ||||||||    
T  12573224 atgacaaagcatcatatgacattttggttatgt-ttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggttt 12573322  T
Q  243 gaggaacatattgtattgtttttcactcga---ttcgtaattcaattttatcctatatcat 300  Q
    ||||||    |||||||| |||||||||||    | |||||||| |||||||||| |||||    
T  12573323 gaggaatgctttgtattg-ttttcactcgagacgttgtaattcatttttatcctagatcat 12573382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 144 - 300
Target Start/End: Original strand, 13549688 - 13549846
Alignment:
Q  144 atgacagagtatcatatgacattatgaatatgtcttttagta-tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggttt 242  Q
    |||||| || ||||||||||||| ||  ||||| |||||||| |||||||||| ||| ||||| |||||||||| ||| |||| || |||| ||||||||    
T  13549688 atgacaaagcatcatatgacattttggttatgt-ttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggttt 13549786  T
Q  243 gaggaacatattgtattgtttttcactcga---ttcgtaattcaattttatcctatatcat 300  Q
    ||||||    |||||||| |||||||||||    | |||||||| |||||||||| |||||    
T  13549787 gaggaatgctttgtattg-ttttcactcgagacgttgtaattcatttttatcctagatcat 13549846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 25883079 - 25883189
Alignment:
Q  186 tttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattc 282  Q
    |||||| ||| ||||||||| |||||||||| |||  ||| ||||||| |||  ||||||||||||||| ||||| ||||||||||| ||   |||||||    
T  25883079 tttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattttttgaggaacatattatattg-ttttcactcgaatcgttgtaattc 25883177  T
Q  283 aattttatccta 294  Q
    | ||||||||||    
T  25883178 agttttatccta 25883189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 30219750 - 30219793
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  30219750 ttgatagacttttagcaagtttactaaaaatgcatcgaagtaat 30219793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 27415199 - 27415260
Alignment:
Q  238 ggtttgaggaacatattgtattgtttttcactcgattcgtaattcaattttatcctatatcat 300  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||| || |||||    
T  27415199 ggtttaaggaacatattgtattg-ttttcactcgagtcgtaattcacttttatcgtaaatcat 27415260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 21829270 - 21829193
Alignment:
Q  187 ttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||| |||| ||||||||  |||||||| || |  |||||||||||| ||||||||||||||||| ||||||| ||||    
T  21829270 ttttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacattttgtattatttt 21829193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 19304444 - 19304487
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||    
T  19304444 ttgatagacttttagcaagtgtactaaaattgcatcgaagtaat 19304487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 21813498 - 21813541
Alignment:
Q  222 tagaggagttgttaatggtttgaggaacatattgtattgttttt 265  Q
    ||||||||||||||||||||||||| |||| || ||||||||||    
T  21813498 tagaggagttgttaatggtttgagggacattttctattgttttt 21813541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 26297761 - 26297841
Alignment:
Q  222 tagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc---gtaattcaattttatcctatatcat 300  Q
    |||||||||||||||||||||||| ||| | || ||||| |||||| |||| ||   ||||||||||||||||||| |||||    
T  26297761 tagaggagttgttaatggtttgagaaactttttatattg-ttttcattcgagtcgttgtaattcaattttatcctaaatcat 26297841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 9158357 - 9158315
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  9158357 tgataaacttttagcaagtgtactaaaaataaatcgaagtaat 9158315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 16244325 - 16244283
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||    
T  16244325 tgatagacttttagcaagtgtactaaaaatacatcgaagtaat 16244283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 55034681 - 55034715
Alignment:
Q  309 ttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||| |||||||||||||||||||||||    
T  55034681 ttttagcaagtgtactaaaaatgcatcgaagtaat 55034715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 19264001 - 19263961
Alignment:
Q  222 tagaggagttgttaatggtttgaggaacatattgtattgtt 262  Q
    |||||||||||| ||||||||||||| |||||| |||||||    
T  19264001 tagaggagttgtcaatggtttgaggatcatattatattgtt 19263961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 25261032 - 25260996
Alignment:
Q  307 acttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  25261032 acttttagcaagtgtactaaaaatgcatcaaagtaat 25260996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 52309380 - 52309416
Alignment:
Q  307 acttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  52309380 acttttagcaagtgtactaaaaatgtatcgaagtaat 52309416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 351 - 437
Target Start/End: Original strand, 282 - 368
Alignment:
Q  351 tcgtctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatggaggatatgtagagaatatat 437  Q
    ||||||||||||| ||||||||||| ||||||||  ||||||||| |||||||||||||| |||| | || ||||||||| ||||||    
T  282 tcgtctccacaaagattgtttcaatctcaactcggtaatttaattataataaggatttaaaaaatagcgggtatgtagaggatatat 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 21365 - 21489
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttttcactcgattc-- 275  Q
    ||||||| |||||||||| ||||||||| ||||||||| | || || | ||| | | || |||||||||||| |||||||||| ||||||||||| ||      
T  21365 ttttagtgtttttctttgcatttgaagaaaaataagatttaagttatatgagatctaaagggtttgaggaacttattgtattg-ttttcactcgagtcgt 21463  T
Q  276 -gtaattcaattttatcctatatcat 300  Q
     |||||||| |||||||||| |||||    
T  21464 tgtaattcacttttatcctaaatcat 21489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 6164 - 6250
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtgagatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||||||| ||||||||  |||| || | |||||||||| ||| || | ||||| | |||||||||||||||||| |||||| ||||    
T  6164 ttttagtacttttctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaacataatgtattatttt 6250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 14293 - 14249
Alignment:
Q  299 attgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||||||||| |||||||||||||||||||| |||||||||||    
T  14293 attgataaacttgtagcaagtatactaaaaatgtatcgaagtaat 14249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 90128 - 90085
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  90128 ttgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 90085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 446936 - 447058
Alignment:
Q  141 ttgatgacagagtatcatatgacattatgaatatgtcttttagtatttttc-tttgtatttgaagagaaataagatgtgagatagaggagttgttaatgg 239  Q
    |||||||||||| ||||||||| ||| |   ||||| |||||||| ||||| |||  ||||||||| |||||||||| |||   ||||| ||||| |||     
T  446936 ttgatgacagagcatcatatgatatttttgctatgt-ttttagtacttttcctttacatttgaagacaaataagatgagagtctgaggaattgttgatga 447034  T
Q  240 tttgaggaacatattgtattgttt 263  Q
    ||| ||||||||||||||||||||    
T  447035 ttttaggaacatattgtattgttt 447058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 2854 - 2812
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  2854 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 2812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 1304 - 1346
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  1304 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 1346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 27478 - 27436
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  27478 tgatagacttttagcaagtgtactaaaaatgcatcgaagtaat 27436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 5720 - 5677
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||    
T  5720 ttgatagacttttagcaagtgtactaaaactgcatcgaagtaat 5677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 22692 - 22606
Alignment:
Q  178 ttttagtatttttctttgtatttgaagagaaataagatgtg-agatagaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    |||| ||| |||| |||| ||||||||| ||| ||| |||| ||||| | ||||||||||| ||||||| ||||||||||||||||||    
T  22692 tttttgtacttttatttgcatttgaagacaaacaag-tgtggagataaaagagttgttaattgtttgagtaacatattgtattgtttt 22606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 7605 - 7562
Alignment:
Q  300 ttgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  7605 ttgataaacttttagcaagtgtactaaaaatatatcgaagtaat 7562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 431 - 389
Alignment:
Q  301 tgataaacttttagcaagtatactaaaaatgcatcgaagtaat 343  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||    
T  431 tgatagacttttagcaagtgtactaaaaatgcatcgaaataat 389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 10188 - 10253
Alignment:
Q  351 tcgtctccacaaaaattgtttcaatttcaactcgtcaatttaattgtaataaggatttaacaaatg 416  Q
    ||||||||||| ||| | ||| | ||| |||||  |||||||||| ||||||||||||||||||||    
T  10188 tcgtctccacataaactatttaatttttaactcaacaatttaattataataaggatttaacaaatg 10253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 58758 - 58799
Alignment:
Q  223 agaggagttgttaatggtttgaggaacatattgtattgtttt 264  Q
    ||||||||||| ||||||||||||||| | ||||||||||||    
T  58758 agaggagttgtcaatggtttgaggaactttttgtattgtttt 58799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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