View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_high_10 (Length: 313)
Name: NF11132_high_10
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 24908021 - 24907732
Alignment:
| Q |
8 |
cagcagagaccaaccatgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatg |
107 |
Q |
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| T |
24908021 |
cagcacagaccaaccatgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatg |
24907922 |
T |
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| Q |
108 |
cttccgcaaagacgagtggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907921 |
cttccgcaaagacgagtggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaatt |
24907822 |
T |
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| Q |
208 |
tagcggtacagatattgtgacagagatgtttcctagatgatggttactatttacaaatgatgttggttccatgtttctggtatatgatgt |
297 |
Q |
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| T |
24907821 |
tagcggtacagatattgtgacagagatgtttcctagatgatggttactatttacaaatgatgttggttccatgtttctggtatatgatgt |
24907732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 24890303 - 24890055
Alignment:
| Q |
23 |
atgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatgcttccgcaaagacga |
122 |
Q |
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|||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||| || |||||| ||||||||||||| |
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| T |
24890303 |
atgaaacatgttctacaaatgctttccaaacaagttcat--tatggagaaggcattgactgagcatggaatatacaaatagaatgcctccgcaaagacga |
24890206 |
T |
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| Q |
123 |
gtggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaatttagcggtacagatat |
222 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24890205 |
gtggttctttgaatgagatgtcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgacatcaaacctctacgcaatttagcggtacagatat |
24890106 |
T |
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| Q |
223 |
tgtgacagagatgtttcctagatgatggttactatttacaaatgatgttgg |
273 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24890105 |
tgtgacagagatgtttcctagatgatggttactatttgcaaatgatgttgg |
24890055 |
T |
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