View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_high_12 (Length: 305)
Name: NF11132_high_12
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 46161117 - 46160831
Alignment:
| Q |
1 |
cttctccacaattaaattgtgtgatttatttgacaaaaaagaaaataaagtagtaattcatccatatagtatggtaaatgtatgccatttagcgaggcca |
100 |
Q |
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| T |
46161117 |
cttctccacaattaaattgtgtgagctatttgaccaaaaa-aaaataaagtagtaattcatccatatagtatggtaaatgtatgccatttagtgaggcca |
46161019 |
T |
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| Q |
101 |
ttgtttatttctatgaaaagcattcacatgcaacccaccatcaatttgtagagtgagcatggttctatatttcaccaatctannnnnnnnggtctgctag |
200 |
Q |
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| T |
46161018 |
ttatttatttctatgaaaagcattcacatgcaacccaccatcaatttgtagagtgagcgtggttctatatttcaccaatcta----ttttggtctgctag |
46160923 |
T |
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| Q |
201 |
tttgaagctgtgactacctaacagaactgcagaaaatatcttcatctgtctgtatgcaaactccttgccaaggcaaattcttggacccgcct |
292 |
Q |
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| T |
46160922 |
tttgaagttgtgactacctaacagaactgcagaaaatatcttcatctgtctgtatacaaactccttgccaagacaaattcttggacccgcct |
46160831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 42 - 292
Target Start/End: Complemental strand, 46167593 - 46167347
Alignment:
| Q |
42 |
aaaataaagtagtaattcatccatatagtatggtaaatgtatgccatttagcgaggccattgtttatttctatgaaaagcattcacatgcaacccaccat |
141 |
Q |
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| T |
46167593 |
aaaataaagtagtatttcatcaatatagtattctaaatgtgtgccctttagtaaggccattatttatttctgtgaaaagcattcacatgcagcccatcat |
46167494 |
T |
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| Q |
142 |
caatttgtagagtgagcatggttctatatttcaccaatctannnnnnnnggtctgctagtttgaagctgtgactacctaacagaactgcagaaaatatct |
241 |
Q |
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| T |
46167493 |
caatttgtagagtaagcgaggttctatatttcaccaatttatttt----ggtctgctagtttgaaactgtggctacctaacagaactgcagaaaatatct |
46167398 |
T |
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| Q |
242 |
tcatctgtctgtatgcaaactccttgccaaggcaaattcttggacccgcct |
292 |
Q |
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| T |
46167397 |
tcatctgtctgtatgcaaactccttgccaaggcaaattcttggacccgcct |
46167347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 64 - 289
Target Start/End: Complemental strand, 46182819 - 46182598
Alignment:
| Q |
64 |
atatagtatggtaaatgtatgccatttagcgaggccattgtttatttctatgaaaagcattcacatgcaacccaccatcaatttgtagagtgagcatggt |
163 |
Q |
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| T |
46182819 |
atatagtatggtaaatgtgtgccatttagtaaggccattatttatttctgtgaaaagtattcacatgcagcccatcatcaatttgtagagtgagcatggt |
46182720 |
T |
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| Q |
164 |
tctatatttcaccaatctannnnnnnnggtctgctagtttgaagctgtgactacctaacagaactgcagaaaatatcttcatctgtctgtatgcaaactc |
263 |
Q |
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| T |
46182719 |
tctatatttcaccaattta----ttttggtctgctagtttatagttgtggctacctaatagaactgcagaaaatatctttatatgtctgtatgcaaactt |
46182624 |
T |
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| Q |
264 |
cttgccaaggcaaattcttggacccg |
289 |
Q |
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| T |
46182623 |
cttgccaaggcaaactcttggacccg |
46182598 |
T |
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