View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11132_high_13 (Length: 301)

Name: NF11132_high_13
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11132_high_13
NF11132_high_13
[»] chr1 (4 HSPs)
chr1 (1-295)||(30523911-30524204)
chr1 (62-105)||(13031140-13031183)
chr1 (70-110)||(102088-102128)
chr1 (72-131)||(30527316-30527373)
[»] chr2 (2 HSPs)
chr2 (80-132)||(19940989-19941041)
chr2 (74-123)||(13486343-13486392)
[»] scaffold0072 (2 HSPs)
scaffold0072 (90-132)||(24692-24734)
scaffold0072 (80-132)||(24493-24545)
[»] chr7 (3 HSPs)
chr7 (62-128)||(24965988-24966054)
chr7 (47-132)||(44611767-44611852)
chr7 (48-104)||(16015394-16015450)
[»] chr3 (3 HSPs)
chr3 (70-124)||(906089-906143)
chr3 (70-125)||(50070212-50070266)
chr3 (70-131)||(1348897-1348958)
[»] scaffold0010 (1 HSPs)
scaffold0010 (61-122)||(161317-161378)
[»] chr6 (3 HSPs)
chr6 (70-123)||(4356006-4356059)
chr6 (70-124)||(2798506-2798560)
chr6 (70-132)||(19385542-19385604)
[»] chr8 (3 HSPs)
chr8 (70-132)||(30014346-30014408)
chr8 (79-132)||(12970261-12970314)
chr8 (70-122)||(37825282-37825334)
[»] chr4 (2 HSPs)
chr4 (78-124)||(16066074-16066119)
chr4 (48-110)||(46676675-46676737)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 30523911 - 30524204
Alignment:
Q  1 aaatgacttcactagtagtataggaaaaaacaccctttgttttactttcttaaaatatgaattggaccgaactcaaccctacaaaaccagtttgttaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30523911 aaatgacttcactagtagtataggaaaaaacaccctttgttttactttcttaaaatattaattggaccgaactcaaccctacaaaaccagtttgttaggt 30524010  T
Q  101 gaggaatgcctcccacttataaactcattttcgggtatcaaatgtagcactaacatttcggataaaaggagtgtccggtgttcgacacgtgtcgctatcg 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  30524011 gaggaat-cctcccacttataaactcattttcgggtatcaaatgtagcactaacatttcggattaaaggagtgtccagtgttcgacgcgtgtcgctatcg 30524109  T
Q  201 gacagcgacacgacaccgacaaatgcggtaacattcaattagtttcattttcaaattgttagcagtgtcatgtccagtgtctgcgtctctgcttc 295  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30524110 gacagcgacacggcaccgacaaatgcggtaacattcaattagtttcattttcaaattgttagcagtgtcatgtccagtgtctgcgtctttgcttc 30524204  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 13031140 - 13031183
Alignment:
Q  62 ttggaccgaactcaaccctacaaaaccagtttgttaggtgagga 105  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  13031140 ttggacctaactcaaccctacaaaaccagtttgtaaggtgagga 13031183  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 102088 - 102128
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcc 110  Q
    ||||||||||||||||||| | |||| ||||||||||||||    
T  102088 aactcaaccctacaaaaccggcttgtaaggtgaggaatgcc 102128  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 30527316 - 30527373
Alignment:
Q  72 ctcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcatttt 131  Q
    ||||||||||||||||||| ||   | |||||| ||||||||||| ||||||||||||||    
T  30527316 ctcaaccctacaaaaccagctta--aagtgagggatgcctcccacatataaactcatttt 30527373  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 19940989 - 19941041
Alignment:
Q  80 tacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcattttc 132  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  19940989 tacaaaactagtttgttaggtgaggaatgtctcccacttataaagtcattttc 19941041  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 13486392 - 13486343
Alignment:
Q  74 caaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaa 123  Q
    |||||| |||||| |||||||| ||||||||| |||| ||||||||||||    
T  13486392 caaccccacaaaatcagtttgtgaggtgaggattgccccccacttataaa 13486343  T

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Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 24692 - 24734
Alignment:
Q  90 gtttgttaggtgaggaatgcctcccacttataaactcattttc 132  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  24692 gtttgtaaggtgagggatgcctcccacttataaactcattttc 24734  T

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Target: scaffold0072; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 24493 - 24545
Alignment:
Q  80 tacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcattttc 132  Q
    ||||||||||| |||| || ||||  |||||||||||||||||||||||||||    
T  24493 tacaaaaccagcttgtaagatgagtgatgcctcccacttataaactcattttc 24545  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 24965988 - 24966054
Alignment:
Q  62 ttggaccgaactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcat 128  Q
    ||||||| ||||||||||||||||||||   ||| |||||||  ||| |||||||||||||||||||    
T  24965988 ttggacccaactcaaccctacaaaaccaacgtgtaaggtgagagatgtctcccacttataaactcat 24966054  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 44611767 - 44611852
Alignment:
Q  47 ttcttaaaatatgaattggaccgaactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcattttc 132  Q
    |||||||||| ||  || |||| ||||||||||| ||||||  | || | |||||| |||||||||| ||||||||||||||||||    
T  44611767 ttcttaaaatttgggttagacctaactcaacccttcaaaactggcttttaaggtgaagaatgcctcctacttataaactcattttc 44611852  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 16015394 - 16015450
Alignment:
Q  48 tcttaaaatatgaattggaccgaactcaaccctacaaaaccagtttgttaggtgagg 104  Q
    ||||||||| || |||||||| ||||||||| ||||||||||| || | ||||||||    
T  16015394 tcttaaaatttggattggacctaactcaaccttacaaaaccagcttttaaggtgagg 16015450  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 906143 - 906089
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaac 124  Q
    |||| ||||||||| |||| | ||||||||||||| |||||||||||||||||||    
T  906143 aacttaaccctacagaaccggcttgttaggtgagggatgcctcccacttataaac 906089  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 50070266 - 50070212
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaact 125  Q
    ||||||||||||||||||||| |||| ||||||| | |||| ||||||||||||||    
T  50070266 aactcaaccctacaaaaccagcttgtaaggtgagaattgcc-cccacttataaact 50070212  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 1348897 - 1348958
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcatttt 131  Q
    ||||||||| |||||||||  ||||| || ||||||||| ||| ||||| ||||||||||||    
T  1348897 aactcaaccatacaaaaccgatttgtgagatgaggaatgtctctcacttttaaactcatttt 1348958  T

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Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 161317 - 161378
Alignment:
Q  61 attggaccgaactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataa 122  Q
    |||||||| |||||||||||||||||  || |||| |||||||| |||||||| ||||||||    
T  161317 attggacctaactcaaccctacaaaataagcttgtaaggtgagggatgcctccaacttataa 161378  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 4356059 - 4356006
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaa 123  Q
    ||||||||| ||||||||| |||||| ||| |||||||| ||||||||||||||    
T  4356059 aactcaaccttacaaaaccggtttgtaaggcgaggaatgtctcccacttataaa 4356006  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 2798506 - 2798560
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaac 124  Q
    ||||||||||||||||| ||| || | |||||||| |||||||| ||||||||||    
T  2798506 aactcaaccctacaaaatcagcttataaggtgaggtatgcctccgacttataaac 2798560  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 19385604 - 19385542
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcattttc 132  Q
    ||||||||| ||||||||||| |||  |||||||  ||| |||||||||||| ||||||||||    
T  19385604 aactcaaccatacaaaaccagcttgaaaggtgagagatgtctcccacttatagactcattttc 19385542  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 30014346 - 30014408
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcattttc 132  Q
    ||||||||| ||| ||||||| |||| |||||||| |||| || | |||||||||||||||||    
T  30014346 aactcaaccttacgaaaccaggttgtaaggtgagggatgcttcactcttataaactcattttc 30014408  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 12970261 - 12970314
Alignment:
Q  79 ctacaaaaccagtttgttaggtgaggaatgcctcccacttataaactcattttc 132  Q
    |||||||||| | || | |||||||  |||||||||||||||||||||||||||    
T  12970261 ctacaaaaccggcttttaaggtgagagatgcctcccacttataaactcattttc 12970314  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 37825334 - 37825282
Alignment:
Q  70 aactcaaccctacaaaaccagtttgttaggtgaggaatgcctcccacttataa 122  Q
    ||||||||| ||||||||||  |||| |||||| ||||| |||||||||||||    
T  37825334 aactcaaccgtacaaaaccaacttgtaaggtgaagaatgtctcccacttataa 37825282  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 16066119 - 16066074
Alignment:
Q  78 cctacaaaaccagtttgttaggtgaggaatgcctcccacttataaac 124  Q
    |||||||||||||||||| ||||||||| |||| |||||||||||||    
T  16066119 cctacaaaaccagtttgtgaggtgaggattgcc-cccacttataaac 16066074  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 46676737 - 46676675
Alignment:
Q  48 tcttaaaatatgaattggaccgaactcaaccctacaaaaccagtttgttaggtgaggaatgcc 110  Q
    ||||||||| ||  ||||||| ||||||||||||||||||||  |||| ||||||||| ||||    
T  46676737 tcttaaaatttgggttggacctaactcaaccctacaaaaccatcttgtaaggtgaggattgcc 46676675  T

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