View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_high_15 (Length: 276)
Name: NF11132_high_15
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_high_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 32176870 - 32176594
Alignment:
| Q |
1 |
gttagatgaggttttaggagttgagttggtggagaaaatgaaggatagagggttggtggttaaagaatgggtggatcaaagtgagattttgagtcataaa |
100 |
Q |
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| T |
32176870 |
gttagatgaggttttaggggttgagttggtggagaaaatgaaggatagagggttggtggttaaagaatgggtggatcaaagtgagattttgagtcataaa |
32176771 |
T |
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| Q |
101 |
agtgttggagggtttgtgagtcattgtggatggaactcaattacagaagcagctttgaatggtgtaccaattttgggttggccacaacatggagatcaga |
200 |
Q |
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| T |
32176770 |
agtgttggagggtttgtgagtcattgtggatggaactcaattacagaagcagctttgaatggtgtaccaattttgggttggccacaacatggagatcaga |
32176671 |
T |
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| Q |
201 |
agataaatgcaaagttggtggagattagtggatggggggt-gtggaacaagagttggggttggggtggtgaacttgt |
276 |
Q |
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| T |
32176670 |
agataaatgcaaagttggtggagattagtggatggggggtggtggaacaagagttggggttggggtggtgaacttgt |
32176594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 32184037 - 32183766
Alignment:
| Q |
1 |
gttagatgaggttttaggagttgagttggtggagaaaatgaaggatagagggttggtggttaaagaatgggtggatcaaagtgagattttgagtcataaa |
100 |
Q |
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| T |
32184037 |
gttagatgaggttttaggagttgagttggtagagagaatgaagaaaaaaggtttggtagttaaggaatgggtggatcaaagtgagattttgagtcacaaa |
32183938 |
T |
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| Q |
101 |
agtgttggagggtttgtgagtcattgtggatggaactcaattacagaagcagctttgaatggtgtaccaattttgggttggccacaacatggagatcaga |
200 |
Q |
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| T |
32183937 |
agtataggaggatttgtgagtcattgtggatggaactcaattatggaggcagctttgaatggtgtgccaatattggcttggccacaacatggtgatcaaa |
32183838 |
T |
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| Q |
201 |
agataaatgcaaagttggtggagattagtggatggggggtgtggaacaagagttggggttggggtggtgaac |
272 |
Q |
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| T |
32183837 |
ggataaatgcagggttggttgagattagtggatgggggatttggaacaagaattggggttggggtggtgaac |
32183766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 33401837 - 33401800
Alignment:
| Q |
103 |
tgttggagggtttgtgagtcattgtggatggaactcaa |
140 |
Q |
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| T |
33401837 |
tgttggagggtttatgactcattgtggatggaactcaa |
33401800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 21004188 - 21004310
Alignment:
| Q |
1 |
gttagatgaggttttaggagttgagttggtggagaaaatgaaggatagagggttggtggttaaagaatgggtggatcaaagtgagattttgagtcataaa |
100 |
Q |
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| T |
21004188 |
gttagatgaggtattgggtgttgagttggtagagagaatgaaggaaaaggggttggtggtggtt--atgggttgatccaagtgagattttgaatcacaaa |
21004285 |
T |
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| Q |
101 |
agtgttggagggtttgtgagtcatt |
125 |
Q |
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| T |
21004286 |
agtgtgggtgggtttatgagtcatt |
21004310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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