View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_high_20 (Length: 249)
Name: NF11132_high_20
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_high_20 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 31703479 - 31703719
Alignment:
| Q |
9 |
gagaagaaactcaaaactgcttctaaatctcatgggcctgatctaattaggtgcctatcaaacttacttgacgattagcatttctaccgtatgacaacac |
108 |
Q |
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| T |
31703479 |
gagaagaaactcaaaactgcttctaaatctcatgggcctgacctaattaggtgcctatcaaacttacttgacaattagcatttctaccgtatgacaacac |
31703578 |
T |
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| Q |
109 |
ctacgacatgctgaataaaacctaccatcttaattcacatgtatatgcttttcaggttcacacagaaaaatatcctcagaatttatcctaaaggagaacg |
208 |
Q |
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| T |
31703579 |
ctacgacatgctgaataaaacctaccatcttaattcacatgtatatgcttttcaggttcacacagaaaaatatcctcagaatttatcctaaaggagaacg |
31703678 |
T |
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| Q |
209 |
tgtccgatccacaaattttaggccacttttagggtggatgt |
249 |
Q |
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| T |
31703679 |
tgtccgatcctcaaattttaggccacttttagggtggatgt |
31703719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 31653278 - 31653375
Alignment:
| Q |
152 |
tatgcttttcaggttcacacagaaaaatatcctcagaatttatcctaaaggagaacgtgtccgatccacaaattttaggccacttttagggtggatgt |
249 |
Q |
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| T |
31653278 |
tatgtttttcaggttcacgcaaaaaaatatccttagaatttatcctaaaggagaacgtgttcaatccacaaattttaggccacatttagggtggatgt |
31653375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 31653149 - 31653235
Alignment:
| Q |
9 |
gagaagaaactcaaaactgcttctaaatctcatgggcctgatctaattaggtgcctatcaaacttacttgacgattagcatttctac |
95 |
Q |
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| T |
31653149 |
gagaagaaactcaaatctgcttctgagtctcatggagccgagctaattaggtacctatcaaactttcacgaacattagcatttctac |
31653235 |
T |
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