View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11132_high_27 (Length: 213)

Name: NF11132_high_27
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11132_high_27
NF11132_high_27
[»] chr7 (7 HSPs)
chr7 (12-194)||(45595561-45595736)
chr7 (71-158)||(31136398-31136482)
chr7 (71-153)||(39571643-39571722)
chr7 (71-156)||(12471579-12471659)
chr7 (113-158)||(12470107-12470152)
chr7 (62-158)||(12012772-12012868)
chr7 (124-156)||(12470902-12470934)
[»] chr2 (7 HSPs)
chr2 (43-133)||(4240972-4241059)
chr2 (62-158)||(10722054-10722149)
chr2 (113-158)||(29109044-29109089)
chr2 (71-158)||(30906683-30906767)
chr2 (71-155)||(3919712-3919799)
chr2 (103-158)||(22848079-22848134)
chr2 (62-158)||(5526475-5526573)
[»] chr3 (6 HSPs)
chr3 (74-158)||(23659645-23659726)
chr3 (71-158)||(26757854-26757943)
chr3 (71-158)||(44285802-44285886)
chr3 (62-154)||(28550706-28550795)
chr3 (71-159)||(44471275-44471360)
chr3 (71-158)||(44681838-44681925)
[»] chr6 (6 HSPs)
chr6 (62-158)||(9826996-9827089)
chr6 (62-158)||(23300676-23300769)
chr6 (62-158)||(11846499-11846592)
chr6 (62-154)||(26186540-26186629)
chr6 (62-158)||(11971669-11971762)
chr6 (76-158)||(2453955-2454036)
[»] scaffold0564 (1 HSPs)
scaffold0564 (62-155)||(6564-6654)
[»] chr8 (4 HSPs)
chr8 (68-158)||(32322059-32322146)
chr8 (72-155)||(9040674-9040754)
chr8 (62-158)||(20860214-20860307)
chr8 (61-155)||(16570695-16570786)
[»] chr4 (4 HSPs)
chr4 (103-158)||(8606006-8606061)
chr4 (62-158)||(19681903-19681996)
chr4 (71-158)||(13207232-13207316)
chr4 (72-136)||(38388184-38388245)
[»] chr1 (3 HSPs)
chr1 (62-158)||(32678291-32678384)
chr1 (62-153)||(8414384-8414472)
chr1 (104-158)||(4919660-4919714)
[»] chr5 (1 HSPs)
chr5 (62-136)||(20665649-20665720)
[»] scaffold1194 (1 HSPs)
scaffold1194 (61-155)||(2380-2471)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 45595736 - 45595561
Alignment:
Q  12 tgagatgaacgatcccatcgagagttaggaaatcaggtgagacttatgtttagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||    
T  45595736 tgagatgaacgatcccatcgagagttaggaaatcaggtgagacttatgttt-------ctttttagtagaaacaaaatagaatgtgagggatgatgagat 45595644  T
Q  112 aagatgatgataggagaaagtgaataaatcaaggagtattttatgttaattttgaccttaatcacaagtgtgtgcgcgcgcgc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  45595643 aagatgatgataggagaaagtgaataaatcaaggagtattttatgttaattttgagcttaatcacaagtgtgtgtgcgagcgc 45595561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 31136482 - 31136398
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    ||||||||||||| | |||||| ||||||   |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  31136482 tttttagtagaaatggaatagagtgtgag---tgatgagataagatgatgataggagaaagtgaatgaattaaggagtattttatgtt 31136398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 39571643 - 39571722
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtatttt 153  Q
    ||||||||| |||||||||||| | ||||   ||||||||| |||||||||||||||||||||||| |||  |||||||||||    
T  39571643 tttttagtataaacgaaatagattatgag---tgatgagatgagatgatgataggagaaagtgaatgaattcaggagtatttt 39571722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 12471579 - 12471659
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatg 156  Q
    |||||||||||||| |||||||  |||||   ||||||||| |||||||||| ||||||||||| ||||  |||||||||||||||    
T  12471579 tttttagtagaaacaaaataga--gtgag---tgatgagatgagatgatgatgggagaaagtgagtaaacaaaggagtattttatg 12471659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 12470107 - 12470152
Alignment:
Q  113 agatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||||| ||||| ||||||| |||||| ||||||||||||||    
T  12470107 agatgatgatgggagagagtgaatgaatcaaagagtattttatgtt 12470152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 12012772 - 12012868
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggat--gatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||  |||||||||||||||||||| | |||||| |||  |||||||| ||||||||   ||||||||||||| ||| |  |||||||| |||||    
T  12012772 tagtgttcgtttttagtagaaacgaaatatagtgtgagtgataagatgagatgagatgatg--gggagaaagtgaatgaattatagagtatttaatgtt 12012868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 12470902 - 12470934
Alignment:
Q  124 ggagaaagtgaataaatcaaggagtattttatg 156  Q
    ||||||||||||| |||||||||||||||||||    
T  12470902 ggagaaagtgaatgaatcaaggagtattttatg 12470934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 4241059 - 4240972
Alignment:
Q  43 atcaggtgagacttatgtttagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtg 133  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||  |||||    |||||||| |||||||||||||||||||||    
T  4241059 atcaagtgagacttatgtttagtgtttctttttagtagaaacaaaatagagcgtgag---agatgagatgagatgatgataggagaaagtg 4240972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 10722149 - 10722054
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaata--aatcaaggagtattttatgtt 158  Q
    |||||||  ||||||||||||||||||||||  |||||   | ||||||| |||||||||| ||||||||||||||  ||| |||||||||||||||||    
T  10722149 tagtgttcttttttagtagaaacgaaatagaccgtgag---taatgagatgagatgatgatgggagaaagtgaatatgaattaaggagtattttatgtt 10722054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 29109044 - 29109089
Alignment:
Q  113 agatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||    
T  29109044 agatgatgataggagaaagtgaatgaattaaggagtattttatgtt 29109089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 30906683 - 30906767
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||||||||||||||||| ||||||   |||||| ||  ||||||||| |  |||||||||| ||| |||||||||||||||||    
T  30906683 tttttagtagaaacgaaatagagtgtgag---tgatgaaatgggatgatgatggacgaaagtgaatgaattaaggagtattttatgtt 30906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 3919712 - 3919799
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggat--gatgagataagatgatgataggagaaagtgaat-aaatcaaggagtattttat 155  Q
    |||| ||||||||||| ||| | |||||| |||  ||||||||||||| ||||||||||||||||||| |||| || |||||||||||    
T  3919712 ttttaagtagaaacgatataaagtgtgagtgatatgatgagataagattatgataggagaaagtgaataaaattaaagagtattttat 3919799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 22848079 - 22848134
Alignment:
Q  103 tgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    ||||||||| |||||||||| ||||||||||||| ||| | |||||||||||||||    
T  22848079 tgatgagatgagatgatgatgggagaaagtgaatgaataatggagtattttatgtt 22848134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 5526573 - 5526475
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatga--tgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||  |||||| | |||||||||||||  ||||| |||||  ||||||  |||||||||   ||||||||||| ||| |||||||||||||||||    
T  5526573 tagtgttcttttttaattgaaacgaaatagagcgtgagtgatgagatgagatgtgatgatgatgacagaaagtgaatgaattaaggagtattttatgtt 5526475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 23659726 - 23659645
Alignment:
Q  74 ttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    ||||||||||||||||||| || |||   |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  23659726 ttagtagaaacgaaatagactgcgag---tgatgagataagatgatgatagtagaaagtgaatgaattaaggagtattttatgtt 23659645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 26757943 - 26757854
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatga--tgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||||||||||||||||| |||| | |||||  |||||| ||||||||||  |||||||||||| ||| |||||||||||||||||    
T  26757943 tttttagtagaaacgaaatagagtgtgggtgatgagatgagatgagatgatgatgagagaaagtgaatgaattaaggagtattttatgtt 26757854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 44285886 - 44285802
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||||||||||||||||| |||||   |||||||||| ||| |||||| ||||||||||||| ||| | |||||||||||||||    
T  44285886 tttttagtagaaacgaaatagagtgtga---atgatgagatgagacgatgatgggagaaagtgaatgaattatggagtattttatgtt 44285802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 28550795 - 28550706
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtatttta 154  Q
    |||||||  |||||| ||||||||||||||||||||||   ||||||||| |||||||||| ||||||||||||| |||  || |||||||||    
T  28550795 tagtgttcttttttaatagaaacgaaatagaatgtgag---tgatgagatgagatgatgatgggagaaagtgaatgaattgagaagtatttta 28550706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 44471360 - 44471275
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtta 159  Q
    |||||||||| ||||||||||| ||||||   ||||| ||| ||||||| || ||||||||||||| ||| | ||||||||||||||||    
T  44471360 tttttagtagtaacgaaatagagtgtgag---tgatgtgatgagatgataatgggagaaagtgaatgaattatggagtattttatgtta 44471275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 44681838 - 44681925
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    ||||||||| |||||||||||| | |||| |||||   || | ||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  44681838 tttttagtataaacgaaatagattatgagtgatgagatgagatgatgatgatgggagaaagtaaatgaattaaggagtattttatgtt 44681925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 9827089 - 9826996
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||  ||||||| |||||||||||||| | ||||   ||||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||    
T  9827089 tagtgttgttttttagaagaaacgaaatagactatgag---tgatgagatgagatgatgatgggagaaagtgaatgaattaaggagtattttatgtt 9826996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 23300769 - 23300676
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||  ||| |||| ||||||||||||||||||||   ||||||||| |||||||||| ||| ||||||||  ||| |||||||||||||||||    
T  23300769 tagtgttcttttatagtggaaacgaaatagaatgtgag---tgatgagatgagatgatgatgggaaaaagtgaaagaattaaggagtattttatgtt 23300676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 11846592 - 11846499
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    ||||||| |||||||||||||||||||||||  |||||    |||||||| |||||||||| | |||||||| || ||| |||||||||| ||||||    
T  11846592 tagtgttcctttttagtagaaacgaaatagaccgtgag---cgatgagatgagatgatgatggaagaaagtggatgaattaaggagtattgtatgtt 11846499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 26186540 - 26186629
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtatttta 154  Q
    |||||||  |||||||||||||| ||||||| ||||||   ||||||||| ||||||||||  |||||||||||| ||| || ||||||||||    
T  26186540 tagtgttcttttttagtagaaacaaaatagagtgtgag---tgatgagattagatgatgatgagagaaagtgaatgaattaaagagtatttta 26186629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 11971762 - 11971669
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||  ||||||||||||| || |||||  |||||||||||   ||| |||||||||| | |||||||| || ||| |||||||||||||||||    
T  11971762 tagtgttcttttttagtagaaatgatatagaccgtgagggatga---gatgagatgatgatggaagaaagtggatgaattaaggagtattttatgtt 11971669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 2453955 - 2454036
Alignment:
Q  76 agtagaaacgaaatagaatgtgagggatga--tgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    ||||||||||||||||| |||||| |||||  ||||||| |||||||   ||||||||||||| ||| ||| | |||||||||||    
T  2453955 agtagaaacgaaatagagtgtgagtgatgagatgagatatgatgatg---ggagaaagtgaatgaattaagaaatattttatgtt 2454036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 6654 - 6564
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttat 155  Q
    ||||||| || |||||||||||||||||||| |||||   ||||||||||  ||||||||| ||||||||||||| ||| || |||||||||||    
T  6654 tagtgttcctatttagtagaaacgaaatagagtgtga---atgatgagatgggatgatgatgggagaaagtgaatgaattaaagagtattttat 6564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 32322146 - 32322059
Alignment:
Q  68 ttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||||||||||  |||||||| ||||||   |||||| || |||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  32322146 ttctttttagtagaattgaaatagactgtgag---tgatgacatgagatgatgatgggagaaagtaaatgaattaaggagtattttatgtt 32322059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 9040754 - 9040674
Alignment:
Q  72 ttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttat 155  Q
    |||||||||||| |||||||| | ||||   ||||||||| ||||||| || ||||||||||||| ||| ||| ||||||||||    
T  9040754 ttttagtagaaatgaaatagagtctgag---tgatgagatgagatgataatgggagaaagtgaatgaattaagtagtattttat 9040674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 20860214 - 20860307
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||  ||||||||| ||| |||||||| |||| |   |||| |||| ||| ||||||  ||||||||||||| || |||||||||||||||||    
T  20860214 tagtgttcttttttagtataaaagaaatagagtgtggg---tgattagatgagacgatgatgagagaaagtgaatagattaaggagtattttatgtt 20860307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 16570695 - 16570786
Alignment:
Q  61 ttagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttat 155  Q
    ||||||||  ||||| ||||||||  |||||| ||||||   ||| ||||| |||||||||| | ||||||||||  ||| ||||||||||||||    
T  16570695 ttagtgttcttttttcgtagaaacagaatagagtgtgag---tgacgagatgagatgatgatggcagaaagtgaacgaattaaggagtattttat 16570786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 8606006 - 8606061
Alignment:
Q  103 tgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    ||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||    
T  8606006 tgatgagatgaaatgatgataggagaaagtgaatgaattaaggagtattttatgtt 8606061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 19681903 - 19681996
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||  |||||||||||||||||||||  ||| ||   |||| |||| |||||||||| |||||  |||||||||| |||||||||||||||||    
T  19681903 tagtgttcttttttagtagaaacgaaatagtgtgtaag---tgattagatgagatgatgatgggagaccgtgaataaattaaggagtattttatgtt 19681996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 13207232 - 13207316
Alignment:
Q  71 tttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||| |||||| |||||||| | ||||   ||||||||| |||||||||||| |||||||||||  || || ||||||||||||||    
T  13207232 tttttaatagaaatgaaatagagtctgag---tgatgagatgagatgatgatagaagaaagtgaatggattaatgagtattttatgtt 13207316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 38388245 - 38388184
Alignment:
Q  72 ttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaat 136  Q
    |||||||||||| |||||||| | ||||   ||||||||| |||||||||| |||||||||||||    
T  38388245 ttttagtagaaatgaaatagagtctgag---tgatgagatgagatgatgattggagaaagtgaat 38388184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 32678291 - 32678384
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||  |||||||||||||||||||||| | ||||   ||||||||| |||| |||||  |||||| ||||||||| || ||||||||||||||    
T  32678291 tagtgttcttttttagtagaaacgaaatagactatgag---tgatgagatgagatcatgatgtgagaaaatgaataaattaacgagtattttatgtt 32678384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 8414384 - 8414472
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtatttt 153  Q
    |||||||  |||||||||||||||||||||| ||||||   |||||||||| ||||||||| | | ||||||||| ||| || |||||||||    
T  8414384 tagtgttcttttttagtagaaacgaaatagagtgtgag---tgatgagataggatgatgatggtaaaaagtgaatgaattaaagagtatttt 8414472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 4919714 - 4919660
Alignment:
Q  104 gatgagataagatgatgataggagaaagtgaataaatcaaggagtattttatgtt 158  Q
    |||||||| |||||||||  |||||||||||||  ||||||||||||||||||||    
T  4919714 gatgagatgagatgatgaagggagaaagtgaatggatcaaggagtattttatgtt 4919660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 20665720 - 20665649
Alignment:
Q  62 tagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaat 136  Q
    |||||||| |||||||||||||| ||||||| ||||||   ||||||||| |||||||||  | |||||||||||    
T  20665720 tagtgtttttttttagtagaaacaaaatagagtgtgag---tgatgagatgagatgatgacggaagaaagtgaat 20665649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 2380 - 2471
Alignment:
Q  61 ttagtgtttctttttagtagaaacgaaatagaatgtgagggatgatgagataagatgatgataggagaaagtgaataaatcaaggagtattttat 155  Q
    ||||||||  ||||| ||||||||  |||||| ||||||   ||| ||||| |||||||||| | ||||||||||  ||| ||||||||||||||    
T  2380 ttagtgttcttttttcgtagaaacagaatagagtgtgag---tgacgagatgagatgatgatggcagaaagtgaacgaattaaggagtattttat 2471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University