View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11132_high_7 (Length: 405)
Name: NF11132_high_7
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_high_7 |
 | |
|
| [»] scaffold0685 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 397
Target Start/End: Original strand, 109057 - 109428
Alignment:
| Q |
21 |
tactgaattaagtgtttctaaaataaggccaagtatatatagcagaaactttaaatgtggctagtcctacaaatgttgtttaatatccgaaatcataggt |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109057 |
tactgaatcaagtgtttctaaaataaggccaagtata----gcagcaactttaaatgtggctagtcctacaaatgttgtttaatatccgaaatcataggt |
109152 |
T |
|
| Q |
121 |
taatggttactataaaaatgattcatcattctgtccatttctgtatttacatttttctaatatcgtcttcactttgttaactatgttaccaggtgtgcgg |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109153 |
taatggttactataaaa-tgattcatcattctgtccatttctgtatttacatttttctaatatcgtcttcactttgttaactatgttaccaggtgtgcgg |
109251 |
T |
|
| Q |
221 |
acgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109252 |
acgataagccatatgtgcctacatatcagttttccaaagaaaaggcaacgagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgt |
109351 |
T |
|
| Q |
321 |
tgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatctccttgtttaggtttttgatgcctatgct |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109352 |
tgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatctccttgtttaggtttttgatgcctatgct |
109428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 166 - 379
Target Start/End: Original strand, 90400 - 90613
Alignment:
| Q |
166 |
tttacatttttctaatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaagg |
265 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
90400 |
tttagatttttctaatatcgttttcactttgtcaactatgttaccaggtgtgcggacgataagccatatgtgcctatatatcaggtttccaaagaaaagg |
90499 |
T |
|
| Q |
266 |
caaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgat |
365 |
Q |
| |
|
| || || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
90500 |
cgaaaagcttgggacttgaatatactcctttggaagtgagcatcaaggagactgttgaaagtttgaaagaaaagaagttcgccaacctttaatttgtggt |
90599 |
T |
|
| Q |
366 |
atctccttgtttag |
379 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
90600 |
atctccttgtttag |
90613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 223 - 369
Target Start/End: Original strand, 2708966 - 2709120
Alignment:
| Q |
223 |
gataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatca--------agga |
314 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||| ||||||||| ||||||| |||| |
|
|
| T |
2708966 |
gataagccgtacatgcctacatatcaggtttccaaagaaaaggtcaagagcttgggaattgaattaactcttttggaagtcagcatcaaggagagtagga |
2709065 |
T |
|
| Q |
315 |
aactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatct |
369 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2709066 |
gactgtggaaaatttgaaagaaaagaagttcgccaacttttaatttgtgatatct |
2709120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 90211 - 90366
Alignment:
| Q |
23 |
ctgaattaagtgtttctaaaataaggccaagtatatatagcagaaactttaaatgtggctagtcctacaaatgttgtttaatatccgaaat-cataggtt |
121 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| | |||||||||| || ||||||| |||| |||||| ||| |||||| |||||||| |
|
|
| T |
90211 |
ctgaattaagtgtttttaaaatacggccaagtata-------gcaactttaaatatgcaaagtcctagaaattttgttttatactcgaaattcataggtt |
90303 |
T |
|
| Q |
122 |
aatggttactataaaa----------atgattcatcattctgtccatttctgtatttacattt |
174 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
90304 |
aatggttactataagatgagccctacatgattcatcattctgtccgtttctgtatttacattt |
90366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 25936423 - 25936549
Alignment:
| Q |
236 |
tgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaaga |
335 |
Q |
| |
|
|||| ||||||||| |||| || |||||||| |||||||||||||| || | |||| |||||||||| | | ||||||| ||||| ||||| || | ||| |
|
|
| T |
25936423 |
tgccaacatatcagatttctaaggaaaaggctaagagtttgggaatcgagtttacttctttggaagtcaccctcaaggagactgtggaaagcttcagaga |
25936522 |
T |
|
| Q |
336 |
aaagaagttcgtcaacttttaatttgt |
362 |
Q |
| |
|
|| ||| ||||||||||||||||||| |
|
|
| T |
25936523 |
gaaaaagatcgtcaacttttaatttgt |
25936549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 26105073 - 26105151
Alignment:
| Q |
236 |
tgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaagga |
314 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||| ||||| || ||||| || | ||||||||||||| | ||| ||||||| |
|
|
| T |
26105073 |
tgccaacatatcagatttccaaggaaaaggccaagagctttggaatcgagtttactcctttggaaatcagcctcaagga |
26105151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 367
Target Start/End: Original strand, 5922 - 6089
Alignment:
| Q |
200 |
actatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttgga |
299 |
Q |
| |
|
||||||||| |||||| || ||||||||||| | ||| |||| |||| ||||||||||||||||||||| || ||| |||||| || ||| |||| |
|
|
| T |
5922 |
actatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaatttattcccctgga |
6021 |
T |
|
| Q |
300 |
agtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatat |
367 |
Q |
| |
|
||||||| | | || | || |||||||| ||||| || ||||| | ||||| ||||||||||||| |
|
|
| T |
6022 |
agtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatttgtgatat |
6089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 367
Target Start/End: Original strand, 29550249 - 29550416
Alignment:
| Q |
200 |
actatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttgga |
299 |
Q |
| |
|
||||||||| |||||| || ||||||||||| | ||| |||| |||| ||||||||||||||||||||| || ||| |||||| || ||| |||| |
|
|
| T |
29550249 |
actatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaatttattcccctgga |
29550348 |
T |
|
| Q |
300 |
agtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatat |
367 |
Q |
| |
|
||||||| | | || | || |||||||| ||||| || ||||| | ||||| ||||||||||||| |
|
|
| T |
29550349 |
agtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatttgtgatat |
29550416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 29556747 - 29556792
Alignment:
| Q |
241 |
acatatcagttttccaaagaaaaggcaaagagtttgggaattgaat |
286 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29556747 |
acatttcagatttccaaagaaaaggcaaagacgttgggaattgaat |
29556792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University