View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_high_8 (Length: 386)
Name: NF11132_high_8
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 39418830 - 39418465
Alignment:
| Q |
20 |
gctgcttggttacacaaagctacaaagaatccaatgtacctaaattacattcaagttaatggtcaaatcctaggagcagcagagtttgacaacacatttg |
119 |
Q |
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| T |
39418830 |
gctgcttggttacacaaagccacaaagaatccaatgtacctaaattacattcaagttaatggtcaaatcctaggagcagcagagtttgacaacacatttg |
39418731 |
T |
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| Q |
120 |
gttgggataacaaacatgttggagcaaggatacttctttcaaaggtcctaaatttgacaacatagtatcaaacaaattatcaataatgttttaaacctaa |
219 |
Q |
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| T |
39418730 |
gttgggataacaaacatgttggagcaaggatacttctttcaaaggtcctaaatttcacaacatagtatcaaacaaattatcaataatgttttaaaactaa |
39418631 |
T |
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| Q |
220 |
catg------nnnnnnnattttgtggttttaggaatttctagttcaaagggtaagatccctccatgactacaagggtcattcagacaattttgtttgctc |
313 |
Q |
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| T |
39418630 |
catgttttttttttttttttttgtgattttaggaatttctagttcaaagggtaagatccctccatgactacaagggtcattcagacaattttgtttgctc |
39418531 |
T |
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| Q |
314 |
tttaattcctggagctggatcctcttctgcacaatatacccctggtaaggtccctctttcttctct |
379 |
Q |
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| T |
39418530 |
tttaattcctggagctggatcctcttctgcacaatatacccctggtaaggtccctctttcttctct |
39418465 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 44512021 - 44512079
Alignment:
| Q |
116 |
tttggttgggataacaaacatgttggagcaaggatacttctttcaaaggtcctaaattt |
174 |
Q |
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| T |
44512021 |
tttggatgggataacaaacatgctggagcaaggatactcctttctaaggtccaaaattt |
44512079 |
T |
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