View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_11 (Length: 352)
Name: NF11132_low_11
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 342
Target Start/End: Original strand, 19344598 - 19344918
Alignment:
| Q |
22 |
cgcggaggagcgactagaagagtgcgagaatgtggacaatgctatcaaagagtttgtgaggctctttgaggaaataacaggaaatgagtttgaatcatgg |
121 |
Q |
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| T |
19344598 |
cgcggaggagcgactagaagagtgcgagaatgtggacaatgctatcaaagagtttgtgaggctctttgaggaaataacaggaaatgagtttgaatcatgg |
19344697 |
T |
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| Q |
122 |
gaaagagataagaaatttcaaaagaaaccactgaagttttaccccattgacatggtacatatatattacttcccataaatgatgatttatcactcctgtt |
221 |
Q |
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| T |
19344698 |
gaaagagagaagaaatttcaaaagaaaccactgaagttttaccccattgacatggtacatatatattacttcccataattgatgatttatcactcctgtt |
19344797 |
T |
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| Q |
222 |
tttggttaaacatatatagcattatggcattgaataggatgatggagttgaagttagacacggggcattaggtcttcgacagctggggatagcagcgaca |
321 |
Q |
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| T |
19344798 |
tttggttaaacatatatagcattatggcattgaataggatgatggagttgaagttagacacggggcattaggtcttcggcagctggggatagcagcgaca |
19344897 |
T |
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| Q |
322 |
cactgtaaacttgagcctatg |
342 |
Q |
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| T |
19344898 |
cactgtaaacttgagcctatg |
19344918 |
T |
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