View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11132_low_13 (Length: 313)
Name: NF11132_low_13
Description: NF11132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11132_low_13 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 27320941 - 27321253
Alignment:
| Q |
1 |
agtattttttcgtatcctcaatttgaagaaatactttgaagttaaacaaatatgaatttgcgaactatataagttcatggattaaacttaatttgcaggc |
100 |
Q |
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| T |
27320941 |
agtattttttcgtatcctcaatttgaagaaatactttgaagttaaacaaatatgaatttgcgaactatataagttcatggattaaacttaatttgcagac |
27321040 |
T |
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| Q |
101 |
tctaactaagctttgagagagataagctatataattcatatgcactaattttatatctctagtgaagatatacaaaactttagttcatgttgcaatacca |
200 |
Q |
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| T |
27321041 |
tcaaactaagctttgagagagataagctatataattcatatgcactaattttatatctctagtgaagatatacaaaactttagttcatgatgcaatacca |
27321140 |
T |
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| Q |
201 |
atataaaaactcggcacaagaatgacagaggtggacaaaagtggccaaactcaatggcagaagaatatagagagcgcagaagaaaacaaatgtcttcatt |
300 |
Q |
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| T |
27321141 |
atataaaaactcggcacaagaatgacagaggtggacaaaagtggccaaactcaatggcagaagaatatagagagcgcagaagaaaacaaatgtcttcatt |
27321240 |
T |
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| Q |
301 |
ttcattgattgat |
313 |
Q |
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| T |
27321241 |
ttcattgattgat |
27321253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 27320810 - 27320850
Alignment:
| Q |
183 |
gttcatgttgcaataccaatataaaaactcggcacaagaat |
223 |
Q |
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| T |
27320810 |
gttcatgttgcaataccaatataaaaactggtcacaagaat |
27320850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Original strand, 27320910 - 27320940
Alignment:
| Q |
283 |
aaaacaaatgtcttcattttcattgattgat |
313 |
Q |
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| T |
27320910 |
aaaacaaatgtcttcattttcattgattgat |
27320940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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